Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1782 ATGGCAATGGCCGCTAAAGCTTTGTCTCTATTCACAGCCACTGCCACTGCCACTGACCTCACAAACAGCTTTGCTTCCAAGTCCCCAGCCGCCCCTCCCAAAGTTTGCGTTTTTTCTGTCAGATGCTCCTTCGCCGGTGATGGAGAAAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTAGAAGATGGTTCAATCTGGAAAGCAAAATCATTTGGTGCTTCAGGAACCCAAGTTCGTGAAGTTGTTTTCAACCCATCATTGACTGGGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTGATGACAAATCCACATATAACTACTAACTACCTATGGATGCACTGCCTGATAGATGATGAGGAATCCAGACAATGCTTCCTTGCCGGCCTTGTAATTCGAAGTTTGAGTATCAGTACCTCAAATTGGAGATGTGCAAAATCACTTGGTGATTACTTAGCAGAAAGGAATATCATGGGAATCTATGATGTTGATACACGTGCAGTCACACGCAGGTTGCGGCAAGATGGCAGTCTTATTGGTGTCCTGAGCACCGACAATTCCAAAACAGATGAGGAACTACTTCAGATGTCTAAGTCATGGGACATTGTTGGTATTGATTTAATAAGTGGTGTATCGTGCAAGTCTCCACATGAATGGGTTGATAAAACAAAGAAGGAATGGGAGTGTAGTCCCAACAACAAGCCTGGAGAAACTTTCCATGTAGTTGCTTATGATTTTGGAATTAAGCATAACATGCTCCGGCGCCTAGCATCTTATGGCTGTAAAATTACTGTTGTGCCGTCTACATGGTCAGCATCAGAAACTTTGAAGATAAAGCCAGATGGGGTCCTTTTCAGCAATGGCCCTGGAGATCCATCAGCTGTTCCTTATGCTGTTGAAACTGTAAAGAATATTCTTGGAAAGATGCCTGTTTTTGGAATTTGCATGGGCCATCAATTGCTAGGCCAGGCTTTAGGCGGTAAGACCTTCAAGATGAAGTTTGGTCACCATGGAGGAAATCATCCTGTCCGTAACCTTCAAACTGGCCACGTTGAAATTAGTGCTCAGGTATCTCAGCTGATGGATTCTTTTCTGCCAATTCTTTATTTTCTAGTGCACTCTCACCATGACTATGGGTAA 1158 0.4378 MAMAAKALSLFTATATATDLTNSFASKSPAAPPKVCVFSVRCSFAGDGERPWKNSDARLVLEDGSIWKAKSFGASGTQVREVVFNPSLTGYQEILTDPSYAGQFVLMTNPHITTNYLWMHCLIDDEESRQCFLAGLVIRSLSISTSNWRCAKSLGDYLAERNIMGIYDVDTRAVTRRLRQDGSLIGVLSTDNSKTDEELLQMSKSWDIVGIDLISGVSCKSPHEWVDKTKKEWECSPNNKPGETFHVVAYDFGIKHNMLRRLASYGCKITVVPSTWSASETLKIKPDGVLFSNGPGDPSAVPYAVETVKNILGKMPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLQTGHVEISAQVSQLMDSFLPILYFLVHSHHDYG* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1782 385 Gene3D - 208 385 IPR029062 -
Dod09g1782 385 SMART CPSase_sm_chain_2 55 189 IPR002474 -
Dod09g1782 385 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 36 362 - -
Dod09g1782 385 Gene3D - 55 207 IPR036480 -
Dod09g1782 385 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 36 362 - -
Dod09g1782 385 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 59 187 IPR002474 -
Dod09g1782 385 Pfam Glutamine amidotransferase class-I 250 357 IPR017926 -
Dod09g1782 385 PRINTS Glutamine amidotransferase superfamily signature 289 298 - -
Dod09g1782 385 PRINTS Glutamine amidotransferase superfamily signature 316 327 - -
Dod09g1782 385 CDD GATase1_CPSase 247 362 IPR035686 -
Dod09g1782 385 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 246 385 - -
Dod09g1782 385 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 56 204 IPR036480 -
Dod09g1782 385 TIGRFAM CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 57 362 IPR006274 GO:0004088|GO:0006207|GO:0006541
Dod09g1782 385 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 247 261 - -
Dod09g1782 385 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 333 350 - -
Dod09g1782 385 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 286 300 - -
Dod09g1782 385 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 316 332 - -
Dod09g1782 385 SUPERFAMILY Class I glutamine amidotransferase-like 235 359 IPR029062 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1782 Dod-Chr9 39470262 39473283 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1782 K01956 - gmx:100788470 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1782 09 39470262 39473283 Dod09g1782 09 39470262 39473283 ECH