Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1740 ATGGGTGAAGACAGCCCGCGTGTTGGTGGGTTTTCAGCTGGTCTGGCTGTGATACTGAATGGGGAGGACAGTAAAACAAGTTCGCCAAAATCTCGGCTTCTTTCGTGTTGTGATGATTTGGGTCAACAGTCTGTGGAGCGTACACTTGAATACGTGCTTGGCCTCCCTAACAGATCGCTCGATCCATTGACTGGTCCAATTGACCACAAGTATATTTGCTCTGTCATTAGGAATGATTTCTCCAGATATAATGCAAAATCAGGTGTTTCATTTGGTGAAAGAGATGGGATTTGTATTATTCAAAATGGCAGCGGGCCTGATGTTGTATGCCTAGAAGAATCCAGTATCTGTGGTGATATTAAACCCATCAAGCCAGCCCTTCTTGTTGAGAGCTTGGCGATGTTCAGCAGTGCCAGGGCTAATGCTTGTGTTTGGAAAGGAAAATGGATGTATGAAGTTATGTTAGAAACATCAGGCATACAACAGCTTGGGTGGGCCACTGTTTCCTGCCCTTTCACTGAGCATAAGGGTGTTGGTGATGCTGATGATTCATATGCTTATGATGGGAGAAGAGTTAGGAAGTGGAATAAGGATGATGAGGCGTATGGCCAATCATGGGTTGTTGGTGATGTCATTGGATGCTGCATAGATTTAGATAATGATGAAATACTATTCTACAGGAATGGCAATTCACTTGGGGTGGCATTCCGTGGGATTCGGAAAATGCGTCCTGGTTTTGGTTATTATCCTGCAATTTCTCTCTCCCAGGGTGAGAGATGTGAATTGAACTTTGGGGCTCGACCCTTTAAGTATCCCATTGAAGGTTACCTCCCTCTTCAGGCTCCCCCCTCTAAGAGTTACTTGGTCACCCAATTGTTGCAATGTTGGTCGAGGCTGTTGGACATGCATTCAGTGGAACGAACCAAGCACTCTTTAGTTCAGAAATTGAGAAGAGTGAAGAGGTGTGTTTCATTAGAAGAAATTTTCCATCCTGCATCTCATGCAATATGTGAGGAATTGTTCTCTATACTTGAAGCAGATGTTGGGAAAGCAGAGTATATGGTTTGGGGTCCATTGTTGTCTTTTATGTTTGAAGTATTTGGATTACATGCACCTCATGATTATTCAAGCTTGGATAAAGCAGTAGATGTGCTGCTACAATTTCAAGGATCACATGTGCTGTTTGAACATATCATAAATGCCCTTTCTTCTGGTTGTAAAACAGCCTCATTTGTTCTAATTGAATGTCCGTACTCTGGTTCATATTCTCACCTTGCATTGGCATGTCATCTGCTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAGTCACCAGATTTTGAGTTCTTATTTGAAGGTTTTCTGTCACAAAAGACTCCAAACAAGCAGGATCTTGATTCCATGATACCAACTGTTTGGTGGCCTGGTTCATGTGAAGATGCGTCTCATGAAAGTAACATGATGTCGACAACCACAGCTTTGTCTGAATCAATCAGCAAGATTGAGGAGAAGCATAGGGACCTTTGTCGCTTGGTGATAGAATTTATACCACCCTCGACACCTCTACAGTTACCCGGAGCAGTGTTTAGGACATTTTTGCAAAGCCTTATACTTAAGAACAGAGGAGCAGAACGAAATGTCCCACCCGCTGGAGTTTCCAGCAACTCAGTTCTTGTCTCAATTTATACAGTTGTTCTCCATTTTCTATCTGAAGGATTCGACTTGGGTGACATCTGTGGCTGGTCAAAGAGCTGTAAAACAGATGTCGGTTTCCTTCATAGAGGTGGTCAACAGAGCTTTCCTGTAAACTTGTTTCTGGAAAATGATACTCAGAGGACTGATATTTCCCGGCTGGGGGGATCCTATACCCACTTATCAAAGCTACATCCTGTAATTGATCATGAAATGGAAGTGATTCAATGGGATGAAGGTTGCATGGATAGTGAAGAAATCAGAGTAACTCATTCAACCAGGCAGAAGCCATGCTGTTGTTCTGGTTACGATTCTGATTTTCCAAGAAACTTGAAGATTCCGGCTAAACACATGACCAAAGGTTCTCGGGGTCATTGTAGCTCTATTTCAGAAAGACCTGCTCATGTTGCTGCTGAATGCAGTGATCGGAGTTTGAATGATGAGATAACAGATAAACCTAGCTCCAGTGATCAATCTGAACCTGAGTATGGTTACCGCCAAGTGCACCATATGAAATCTGTACCAAAGGATACTGATGTGTCTACAGCTACACTACGAGAAGAGGAACTTCTTGATGCTTTACTCTGGTTGTATCATGTTGGTCTTGCTCCAAATTTTAAGCAGGTATCATACTACATGACTCATCAAGCGCAGTCAATCTCCCTTTTGGAGGAAACTGACAAGCAAATAAGAGAACGCCCTTGCTGTGAGCAATTGAAGATTTTGAAAGAAGCTCGTAATGAATATAGAGAAGAGGTTATTGATTGTGTCAGGCATTGTGCTTGGTATCGCATCTCTCTATTTTCTCGATGGAAGCAGAGAGGGATGTATGCAACCTGCATGTGGGTTGTCCAGTTGCTGCTGGTTCTTAGCAATTTGGGTTCCGTGTTCATCTACATCCCTGAGTATTATCTGGAAGCTCTGGTTGATTGCTTTCATGTGCTGCGGAAAAGTGATCCTCCATTTGTTCCATCCACAATTTTTATCAAACGAGGACTTGCTTCATTTGTCACCTTTGTAGTTACTCATTTCAACGATCCAAGAATATCAAGTGCGGATCTCAGGGATCTTCTTCTTCAGTCTATATCTGTCCTGGTGCAGTACAGGGAGTATTTGGCTGCTTTTGAGAGCAATGAGGCAGCTACCCAAAGGATGCCAAAGGCCTTACTATCAGCATTTGATAACAGATCTTGGATCCCAGTGACAAACATAATCCTTCGATTGTGCAAGGGTTCTGGTTTCAACATTTCAAAGAATGGAGAGTCATCTTCATCATCAGTTCTTTTCCAAAAGCTGCTAAAAGAAGCTTGCTTAAATGATGAAGGGTTGTTTTCATCCTTTCTAAACCGTCTATTTAATACACTTAGCTGGACAATGACTGAATTTTCAGTTTCTGTGCGAGAAATGCAAGAAAAGTACCAGGTAATAGAGTTTCAGCAAAGGAAATGCTGTGTCATATTTGATCTTTCGTGCAATCTTGCTAGGATTCTAGAGTTCTGCACTCACGAGATTCCTCAAGCATTCCTTGCTGGACCAGACACAAACCTACGGAGGTTAACTGAGATGATTGTATTTATCTTAAATCACATTACTTCTGCCGCTGATGCTGAATTTTTTGACTTGTCCCTAAGACGGCATAGCCAATCTTCAGAGAAAGTGAATCGAAGCATGATATTGGCACCTCTTGTTGGGATCATCTTAAATTTATTGGATGCTACTAATTTAGCAGAACATCAAGAGAACAATGATCTTTTGGACGTCTTTGCAAGCATGGACTGTCCAGATACTGTTCATCATGGATTCCAGTATCTTCTGGATTATAATTGGGAAGGATCTTTTCGAGGGGAAGCTCATGTGGCAAAATATGAGCAGCTAGAGAATTTTCTGTGCCTCCTAACTTGCCGCATCGTGATACAACACGATAAATTGGAAAGTGTGGGGGATGCAGATCTTGATGATGGCTTGTGCTGCATATGTTATGCATGTGAAGCAGATGCTCGAATTGCACCTTGTTCACATAGGTCTTGCTATGGCTGTATAACCAGGCATCTTTTGAACTGCCAGAGATGTTTCTTTTGCAACACAACAGTGACAGATGTCAGCAGAATTGCTAAGTAA 3810 0.4231 MGEDSPRVGGFSAGLAVILNGEDSKTSSPKSRLLSCCDDLGQQSVERTLEYVLGLPNRSLDPLTGPIDHKYICSVIRNDFSRYNAKSGVSFGERDGICIIQNGSGPDVVCLEESSICGDIKPIKPALLVESLAMFSSARANACVWKGKWMYEVMLETSGIQQLGWATVSCPFTEHKGVGDADDSYAYDGRRVRKWNKDDEAYGQSWVVGDVIGCCIDLDNDEILFYRNGNSLGVAFRGIRKMRPGFGYYPAISLSQGERCELNFGARPFKYPIEGYLPLQAPPSKSYLVTQLLQCWSRLLDMHSVERTKHSLVQKLRRVKRCVSLEEIFHPASHAICEELFSILEADVGKAEYMVWGPLLSFMFEVFGLHAPHDYSSLDKAVDVLLQFQGSHVLFEHIINALSSGCKTASFVLIECPYSGSYSHLALACHLLRREELMVLWWKSPDFEFLFEGFLSQKTPNKQDLDSMIPTVWWPGSCEDASHESNMMSTTTALSESISKIEEKHRDLCRLVIEFIPPSTPLQLPGAVFRTFLQSLILKNRGAERNVPPAGVSSNSVLVSIYTVVLHFLSEGFDLGDICGWSKSCKTDVGFLHRGGQQSFPVNLFLENDTQRTDISRLGGSYTHLSKLHPVIDHEMEVIQWDEGCMDSEEIRVTHSTRQKPCCCSGYDSDFPRNLKIPAKHMTKGSRGHCSSISERPAHVAAECSDRSLNDEITDKPSSSDQSEPEYGYRQVHHMKSVPKDTDVSTATLREEELLDALLWLYHVGLAPNFKQVSYYMTHQAQSISLLEETDKQIRERPCCEQLKILKEARNEYREEVIDCVRHCAWYRISLFSRWKQRGMYATCMWVVQLLLVLSNLGSVFIYIPEYYLEALVDCFHVLRKSDPPFVPSTIFIKRGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYREYLAAFESNEAATQRMPKALLSAFDNRSWIPVTNIILRLCKGSGFNISKNGESSSSSVLFQKLLKEACLNDEGLFSSFLNRLFNTLSWTMTEFSVSVREMQEKYQVIEFQQRKCCVIFDLSCNLARILEFCTHEIPQAFLAGPDTNLRRLTEMIVFILNHITSAADAEFFDLSLRRHSQSSEKVNRSMILAPLVGIILNLLDATNLAEHQENNDLLDVFASMDCPDTVHHGFQYLLDYNWEGSFRGEAHVAKYEQLENFLCLLTCRIVIQHDKLESVGDADLDDGLCCICYACEADARIAPCSHRSCYGCITRHLLNCQRCFFCNTTVTDVSRIAK* 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1740 1269 SUPERFAMILY Concanavalin A-like lectins/glucanases 134 281 IPR013320 -
Dod09g1740 1269 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 41 1267 IPR045129 GO:0004842
Dod09g1740 1269 SMART SPRY_3 146 268 IPR003877 GO:0005515
Dod09g1740 1269 Pfam Ubiquitin elongating factor core 806 957 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Dod09g1740 1269 Gene3D - 124 298 IPR043136 -
Dod09g1740 1269 ProSiteProfiles Zinc finger RING-type profile. 1220 1254 IPR001841 -
Dod09g1740 1269 MobiDBLite consensus disorder prediction 705 719 - -
Dod09g1740 1269 ProSiteProfiles B30.2/SPRY domain profile. 82 269 IPR001870 -
Dod09g1740 1269 Pfam SPRY domain 148 266 IPR003877 GO:0005515
Dod09g1740 1269 CDD RING-HC_RNF123 1218 1258 - -
Dod09g1740 1269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1214 1269 IPR013083 -
Dod09g1740 1269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF123 41 1267 - -
Dod09g1740 1269 SUPERFAMILY RING/U-box 1205 1262 - -
Dod09g1740 1269 CDD SPRY_RNF123 137 265 IPR035773 -
Dod09g1740 1269 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 137 IPR045737 -
Dod09g1740 1269 MobiDBLite consensus disorder prediction 705 735 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1740 K12169 - gmx:100800617 2316.58