Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1535 ATGCTCGACGAGGTTGCTCACGTGTGCAGCGACTCCGCCCCACCGCAAAACAGCTCTGGAAACCCTTATCGGAATCCTCAAACTCGAAATCCTAGGCGCCCATGGCCTCCACCCCATGAAATCCAAAGGCCCAGGAAAGGGCTCCACGGACGCTTATTGTGTGGCACTTTTATTAGAACAAGAGAAATATTATGGGTGAGGAAGGAGTATGGATTGGAAATTAGATTTAAAATAAAGGGAACGGGGTCGTCAGAGAATAGGGAACTTGCCACAAGGCTACCTTCGTTGGTCAGAGTTTACGCCATTTACAACAAGGATGCCTCAGCGAACCACTCCTCCTCTTTCATTCTCAAGTCTCACGAACTGCTCGGAGAGATACTCTTGTCAGGAAAATCTTTGTTGGATTGGATTCCGCTGTTTCTAACAGATCAAAGCTGTTGTAGGATCTTGGCATTGGAAATCTGTCAATTTCTTTCCATACGCAGCTTTAGTACCCTGGTATTTATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCTCGGACACCACTAGGATTGAATACAAAGTTTTCTGCTCATCGACCGGCACTGAAGAGACCTTTAGTTGTAGCATTTAAAGGAGATAAGCACAATGATTTGGCGTTGGTTGCAACTCGAGAGAAAATTCCTATGGCTGTCGAAACGGCCAAGACTAATAAGAAAAGGTCAGGAAAAGCTAGTAAATTGCCTAAGAGAGTGAAAGATGTCTTTGCAGAGGAAACTTCTCCATCGTCCTTGGATATGGACTACAATGAAGCTGCTGCAATTCTTGAAAATATTTACAAGCTCAGTCCAGCATCTGATGCTCGCAATGCAGAAAATATAGACAGTAAGGTCAAAAGATTCTCGCGGAGGGGGAAGAAGATTGGTGATAAGGGTAAAGAAGAGGAATTAAACAATGATCGGGTGGTCAGAAACAAGAAAACGAAGGCCAAACGATTGAGTCTTGATAAGAGGATTGAATTAAAAAAGAGCAAGGAAGGGGAGGTACTCATTCCAACCCGAAAGAAAAGAACTGTCAAGAACAGTGCGGTGAAGATTGAGGAACTTGTTAGGGAATATTCAGCATCAACTGACCTTGGCAGTTTGGACTGGAAAAAAATGAGAATACCTCCAGTTCTTCCTTCTTCAGAGCATTCTTGGTTGTTCAAGTTGATGCAACCTATGAAGGCACTTCTTCAAGTGAAAGAAGATTTACAGAAGGAGCTAGGTAGGGAACCTACCGAGACTGATCTAGCTGATGCAGCAAATATGAGCACCTTTCAAGTAAAGAAAGATATAGAGGTTGGTCGTGCTGCAAGAAACAAGCTCATAAAGCACAACCTCCGGCTCGTCTTGTTTGTGATCAACAAATATTTTTCGGATTTCTCTAATGGCCCAAGGTTTCAAGATCTTTGCCAGGCAGGAGTTAAGGGACTTATCACAGCAATTGATCGTTTTGAGCCAAACAGAAGATTTCGGCTATCTACCTATGGTTTGTTTTGGATAAGACATTCTATCATTCGTTCCATGACCCTCTCAAGCTTCACACGCGTTCCCTTTGGACTTGAATCGGTTAGAGCAGAGATCCAAAGAGCTAAACTTGAGTTAACATTTGAGCTTCGGAGGCCACCAACAGATGAAGAAATAATTGAAAGAGTTCAAATCTCCCCTCAAAGATACCATGATGTAATGAAGGCATCAAAATCCATTCTTTCCCTGAACTCGCGGCATTCGACCACGCAAGAGGAGTTTATTAATGGGATAACCGATTATGATGATTTTAATGGTGATAATAGAAGGCAACACGCTCTACTGAGGCTTGCTCTTGATGATGTGCTCGATTCCCTGAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATTCGGACTGGACGGTAAGGGTGACAGAACGTTGGGAGAAATCGCTGGGAACTTGAATATCTCTAGGGAAATGGTAAGAAAGCACGAGGTCAAGGCCCTCATGAAGCTCAAGCATCCAGCTCGAGTGGATTATCTTCGTCGTTATGTTGTATAA 2052 0.4371 MLDEVAHVCSDSAPPQNSSGNPYRNPQTRNPRRPWPPPHEIQRPRKGLHGRLLCGTFIRTREILWVRKEYGLEIRFKIKGTGSSENRELATRLPSLVRVYAIYNKDASANHSSSFILKSHELLGEILLSGKSLLDWIPLFLTDQSCCRILALEICQFLSIRSFSTLVFMGVVTVSSSAARTPLGLNTKFSAHRPALKRPLVVAFKGDKHNDLALVATREKIPMAVETAKTNKKRSGKASKLPKRVKDVFAEETSPSSLDMDYNEAAAILENIYKLSPASDARNAENIDSKVKRFSRRGKKIGDKGKEEELNNDRVVRNKKTKAKRLSLDKRIELKKSKEGEVLIPTRKKRTVKNSAVKIEELVREYSASTDLGSLDWKKMRIPPVLPSSEHSWLFKLMQPMKALLQVKEDLQKELGREPTETDLADAANMSTFQVKKDIEVGRAARNKLIKHNLRLVLFVINKYFSDFSNGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYGLFWIRHSIIRSMTLSSFTRVPFGLESVRAEIQRAKLELTFELRRPPTDEEIIERVQISPQRYHDVMKASKSILSLNSRHSTTQEEFINGITDYDDFNGDNRRQHALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1535 683 Gene3D - 605 683 IPR036388 -
Dod09g1535 683 Coils Coil 528 548 - -
Dod09g1535 683 Pfam Sigma-70 region 3 534 597 IPR007624 GO:0003700|GO:0006352|GO:0006355
Dod09g1535 683 Pfam Sigma-70 region 2 449 515 IPR007627 GO:0003700|GO:0006352|GO:0006355
Dod09g1535 683 Gene3D - 396 438 IPR036388 -
Dod09g1535 683 Gene3D - 522 574 IPR036388 -
Dod09g1535 683 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 524 589 IPR013324 -
Dod09g1535 683 PRINTS Major sigma-70 factor signature 658 669 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod09g1535 683 PRINTS Major sigma-70 factor signature 622 634 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod09g1535 683 PRINTS Major sigma-70 factor signature 500 508 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod09g1535 683 PRINTS Major sigma-70 factor signature 476 489 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod09g1535 683 PRINTS Major sigma-70 factor signature 643 658 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod09g1535 683 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 368 516 IPR013325 GO:0003700|GO:0006352|GO:0006355
Dod09g1535 683 Gene3D - 439 517 - -
Dod09g1535 683 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 170 683 - -
Dod09g1535 683 Pfam Sigma-70, region 4 618 671 IPR007630 GO:0003700|GO:0006352|GO:0006355
Dod09g1535 683 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 588 680 IPR013324 -
Dod09g1535 683 MobiDBLite consensus disorder prediction 1 44 - -
Dod09g1535 683 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 445 671 IPR014284 GO:0003700|GO:0006352|GO:0006355
Dod09g1535 683 MobiDBLite consensus disorder prediction 11 28 - -
Dod09g1535 683 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 170 683 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1535 K03093 - gmx:100776369 778.089