Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1504 ATGGTGCTCACGTCCTCTGCACGTGATTACATCAACCGCATGTTGCAGGACATCTCCGGCATGAAGGTTCTCATCCTTGATTCCCAAACGGTGAGTATTGTGAGTGTTGCGTATTCACAGTCAGAGCTTCTTCAGAAAGAAGTGTTCTTAGTGGAGTTGGTGGATTCTATTTCCAACTCAAAGGAATCCATGTCTCATCTCAAGGCCGTTTGCTTCCTTCGCCCGACATCAGAGAATATCCAGCACTTGCGCCGCCAGCTCGCTACCCCTAGATTCGGAGAGTACCACCTATTTTTCTCCAACATATTGAAGGACACTCAGATCCACATACTTGCTGATTCAGATGAACAGGAAGTTGTCCAGCAAGTTCAGGAGTTCTATGCAGACTTTGTTGCAATTGATCCATATCATTTCACTTTGCATGTGCCCTCAAATTACATTTATATGCTCCCAGCTGTGGTAGATCCCTCGACAGTGCAACGCTTCTGTGATCGGGTAGTTGATGGTCTAGCAGCGGTCTTTTTGGCATTAAAACGGAGACCTGTAATTAGATATCAAAGGACATCTGACATTGCAAAAAGGATAGGACAGGAAGCAGCTAAACTGATGTACCAACAGGAAAGTGGTCTTTTTGATTTTAGGCGAACAGAAGTTTCACCATTGTTGTTGGTGATTGACAGGAGAGATGATCCGGTAACCCCATTGCTAAATCAATGGACCTATCAGGCTATGGTTCATGAATTGATAGGAATCCAAGACAACAAAGTGAACTTGAAATCTGTTGGTAAATTTTCAAAGGATCAGGAGGATGTTGTGCTGTCATCAGAACAAGATTCATTTTTCAAAGCTAACATGTATGAGAATTTTGGAGATATTGGTATGAACATCAAGCGGCTGGTTGATGAATTTCAGCAAGTGGCAAAGAGTAACCAGAACATCCAAACAATAGAGGAAATGGCCAAATTTGTTGACAATTACCCTGAGTACAGAAAAATGCATGGAAATGTGTCAAAACATGTGACTTTGGTAACAGAAATGAGCAAGATAGTTGAAGACCGAAAACTTATGTTAGTTTCACAAACAGAACAGGAGTTGGCTTGCAATGGAGGACAAGGGGCTGCTTTTGAGGCAGTGACAAATCTATTAAACAATGATAGCATATCAGATGTGGACCGACTACGCTTGGTCATGCTATATGCTTTGCGATATGAGAAAGATAGCCCGGTTCAATTAATGCAGCTTTTCAACAAACTGGCTTCCCGATCTGCGAAGTATAAACCTGGGCTTGTCCAGTTTCTTTTGAAGCAAGCGGGTGTTGACAAGAGAACCGGTGACCTTTTTGGAAATCGAGACCTAATGAATATTGCCCGCAACATGGCTCGTGGATTGAAGGGTGTTGAGAATGTGTACACCCAGCACCAGCCACTTCTTTTCCAAACCATGGAAAGCATTGTCAAAGGACGGTTGAGAGATGTAGATTACCCATTTGTTGGAAATCACTTTCAACAAGGAAGGCCTCAGGAAGTTGTCATCTTCATTGTTGGTGGGACAACTTATGAGGAGTCACGATGTGTTGCTCTACAAAATGCCAGCAATACTGGAATTCGGTTTATACTTGGTGGCTCTTCTGTTCTTAATTCTAAGAGGTTTTTTAGGGATTTAGAAGAAGCTCAAAGAGTAGCTCGTTCTAGCACCACTGTCATTTGA 1707 0.4265 MVLTSSARDYINRMLQDISGMKVLILDSQTVSIVSVAYSQSELLQKEVFLVELVDSISNSKESMSHLKAVCFLRPTSENIQHLRRQLATPRFGEYHLFFSNILKDTQIHILADSDEQEVVQQVQEFYADFVAIDPYHFTLHVPSNYIYMLPAVVDPSTVQRFCDRVVDGLAAVFLALKRRPVIRYQRTSDIAKRIGQEAAKLMYQQESGLFDFRRTEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVNLKSVGKFSKDQEDVVLSSEQDSFFKANMYENFGDIGMNIKRLVDEFQQVAKSNQNIQTIEEMAKFVDNYPEYRKMHGNVSKHVTLVTEMSKIVEDRKLMLVSQTEQELACNGGQGAAFEAVTNLLNNDSISDVDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLFGNRDLMNIARNMARGLKGVENVYTQHQPLLFQTMESIVKGRLRDVDYPFVGNHFQQGRPQEVVIFIVGGTTYEESRCVALQNASNTGIRFILGGSSVLNSKRFFRDLEEAQRVARSSTTVI* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1504 568 Pfam Sec1 family 22 553 IPR001619 GO:0016192
Dod09g1504 568 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Dod09g1504 568 Gene3D - 2 128 IPR043154 -
Dod09g1504 568 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 556 IPR036045 -
Dod09g1504 568 Gene3D - 353 474 - -
Dod09g1504 568 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 555 - -
Dod09g1504 568 PIRSF VPS45_Sec1 1 565 IPR001619 GO:0016192
Dod09g1504 568 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 555 IPR001619 GO:0016192
Dod09g1504 568 Gene3D - 138 555 IPR027482 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1504 Dod-Chr9 36683617 36691277 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1504 K12479 - gmx:100782786 1036.94