Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1497 ATGAGTCACCGCGGAGGAATGGACGACGACGACGACGAGGAGTACGGCGAGGAGGAGGACGAGCAGGTCGCCGACTTCGACGACGACGCCGCGGCGGAGGAGGAGGACGACGAGGAGCAGGATGACAGAGGCCGCGGCGGCCGGAAGCGGAGGCGATCTAATTACATCGACGACGACGCCGAGGAGGTCGACGAGGATTACGACGAGGATGAAGATTTCGGCGGCAGAGGAGGTGGTGGCCGCAGGCGCCCGTACAAGAAGGTCTCCGCTGGCGCCTCCAATTTCTTCGAGGACATGGCAGATGTCGCCTCCGATGAGGATGAGGAAGAGGAGGAAGGCGAGGATGACTTCATTGATGAGGGTGGAGCTGAACTACAAGAGGAAGATGACGGTCGAAGGATGCATGGGAGGCATTTCTTGCCACATGACCAAGAAGACCAAGAAGATCTCGAAGCGGTGGCAAAAAAGATTCAGGAAAGGTATGGAAGGCAGCCTCAGGGAGATTATGAAGAAGAAGCTACAGATGTGGAACAGCAAGCTCTTCTTCCATCTGTTAGAGACCCAAAGCTGTGGATGGTGAAATGTGCGATTGGTCGTGAGCGAGAAACAGCTGTTTGCCTCATGCAAAAGTATATAGATAAGAAGTCTGAGTTGCAAATCAGGTCGGCTATTGCTCTTGACCATCTCAAGAACTACATATATGTGGAAGCTGATAAAGAAGCCCATGTGAGAGAGGCTTGCAAAGGTCTGCGCAACATATTTGCCCAAAGAATAACACTTGTTCCAATCAGGGAAATGACTGATGTTCTGTCAGTCGAAAGCAAAGCTATTGATCTTGCCAGAGATACTTGGGTCAGAATGAAGATTGGGACATATAAAGGGGACCTTGCCAAAGTAGTGGATGTCGATAATGTGCGGCAGAGGGTTACTGTGAAACTAATTCCAAGGATAGATTTACAGGCCCTTGCAAACAAACTGGAAGGTAGAGAAGTTGTTAAAAAGAAGGCATTTGTTCCTCCTCCTCGCTTTTTCAATGTTGATGAAGCTAGGGAAATGCATATTCGTGTAGAGCATAGACGTGATGCCTATGGGGAACGGTTTGATGCAATTGGGGGAATGATGTTCAAGGATGGATTCTTATACAAAACTGTTTCAATAAAATCCATTAGTTCTCAGAACATCAAACCTACTTTAAATGAACTGGAAAAATTTCGTAAACCTGGTGAGACTGGTGACGGTGATGTGGCTAGCCTGTCGACTCTGTTTGCGAACAGAAAGAAAGGGCATTTTATGAAAGGTGATGCTGTTATTGTCGTCAAGGGTGATTTGAAGAACTTGAAGGGGTGGGTGGAGAAAGTTGATGAAGATAATGTTCACATAAGACCAGAAATTAAGGGTCTTCCAAAAACCCTTGCTGTAAATGAAAAGGAACTTTGTAAATATTTTGAACCTGGAAACCATGTTAAAGTAGTTTCTGGTGCTCAAGAGGGTGCTACTGGCATGGTTGTGAAAGTGGAGCAGCATGTACTGATTTTAATATCTGATACAACAAAAGAACACATCCGTGTGTTTGCAGATGATGTTGTGGAGAGCTCTGAAGTGACCACAGGAGTCACAAAAATTGGGGACTATGAACTTCGTGATCTTGTATTGCTAGATAATTTGAGCTTTGGTGTGATAATTCGTGTAGAAAGTGAGGCATTTCAGGTTCTTAGGGGGGTTCCTGACAGGCCTGAAGTTGCGCTTGTTAAATTAAGAGAGATCAAGTGTAAGATAGAGAAGAAAATAAGTGTGCAGGATAGGTTTAAAAATACAGTTTCATCAAAGGATGTTGTGCGGATAGTTGAGGGCCCCTGTAAAGGCAAACAAGGTCCAGTGGAGCACATATACAGGGGTGTCTTGTTCATCTTCGATCGCCATCATCTTGAACACGCAGGCTTTATATGTGCCAAGGCCCAATCATGTGTAGTCGTGGGAGGTTCACGCTTCAGTGGTGACAGAAGTGGTGATGCCTACTCAAGATTTCCAGGCCTCAGAACTCCACCACGTATTCCACAGTCCCCAAGGAGGTTTCAACGAGGAGGGCCTCCAATTGATTCTGGAGGCAGGCATAGGGGTGGAAGGGGGCATGATGGTTTAGCTGGTTCGACAGTTAAAGTACGCCAGGGTCCCTATAAAGGCTATCGTGGCCGTGTCATAGAAGTTAAAGGCACATCAGTTCGGGTTGAATTGGAGTCCCAGATGAAGGTTGTGACAGTTGATCGCAACCATATATCCGACAATGTAGCTGTAACTCCATATCGTGAAACTCGGTATGGGATGGGAAGTGAAACCCCAATGCATCCTTCTCGAACTCCCTTGCATCCATACATGACTCCTATGAGAGATCCTGGAGCAACTCCTATTCATGATGGAATGAGGACACCTATGCGTGACCGGGCATGGAATCCTTATACACCAATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAGCCAGCCCACAGTACCAGCCAGGAAGCCCTCCTTCACGGCCATATGAAGCCCCGACTCCTGGTGCTGGTTGGGCTAGCACTCCTAGTGGTAATTATAGCGAGGCTGGGACACCGCGGGACAGTTCTGCCTATGCCAATGCTCCAAGCCCGTATTTACCATCAACACCTGGTGGGCAGCCTATGACACCAAATTCAGCAGCATATCTTCCTGGCACCCCTGGAGGACAGCCTATGACTCCAGGGACTGGTGGTCTAGACATGATGTCCCCAGTTTTAGGTGGGGACAATGAAGGACCATGGTTAATGCCAGACATATTAGTCAATGTGCACAGGCCTGGAGAAGAATCTATTGGAGTTATAAGAGAGGTTCTTCCGGATGGCTCTTGCAAGGTTGCTCTTGGGTCTAGTGGGAATGGTGAAACCATAACAGCCCTTACTAATGAAATGGAGGCTGTGGTACCAAGGAAATCTGACAAAATAAAGATCATGGGTGGAGCATTGCGAGGCGCCACAGGCAAGTTGATTGGTGTAGATGGTACTGATGGTATTGTAAAGGTAGACGACACGTTGGATGTGAAGATTTTGGACTTAGTTTTCTTGGCAAAATTAGCTCAACCATGA 3132 0.4754 MSHRGGMDDDDDEEYGEEEDEQVADFDDDAAAEEEDDEEQDDRGRGGRKRRRSNYIDDDAEEVDEDYDEDEDFGGRGGGGRRRPYKKVSAGASNFFEDMADVASDEDEEEEEGEDDFIDEGGAELQEEDDGRRMHGRHFLPHDQEDQEDLEAVAKKIQERYGRQPQGDYEEEATDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKKSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFAQRITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFFNVDEAREMHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISSQNIKPTLNELEKFRKPGETGDGDVASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTKIGDYELRDLVLLDNLSFGVIIRVESEAFQVLRGVPDRPEVALVKLREIKCKIEKKISVQDRFKNTVSSKDVVRIVEGPCKGKQGPVEHIYRGVLFIFDRHHLEHAGFICAKAQSCVVVGGSRFSGDRSGDAYSRFPGLRTPPRIPQSPRRFQRGGPPIDSGGRHRGGRGHDGLAGSTVKVRQGPYKGYRGRVIEVKGTSVRVELESQMKVVTVDRNHISDNVAVTPYRETRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPSGNYSEAGTPRDSSAYANAPSPYLPSTPGGQPMTPNSAAYLPGTPGGQPMTPGTGGLDMMSPVLGGDNEGPWLMPDILVNVHRPGEESIGVIREVLPDGSCKVALGSSGNGETITALTNEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVFLAKLAQP* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1497 1043 MobiDBLite consensus disorder prediction 126 148 - -
Dod09g1497 1043 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 33 1041 - -
Dod09g1497 1043 Pfam Early transcription elongation factor of RNA pol II, NGN section 189 270 IPR005100 -
Dod09g1497 1043 CDD KOW_Spt5_5 713 759 IPR041978 -
Dod09g1497 1043 CDD NGN_Euk 189 271 IPR039385 -
Dod09g1497 1043 CDD KOW_Spt5_4 609 651 IPR041977 -
Dod09g1497 1043 MobiDBLite consensus disorder prediction 10 40 - -
Dod09g1497 1043 MobiDBLite consensus disorder prediction 41 58 - -
Dod09g1497 1043 Gene3D - 698 761 IPR014722 -
Dod09g1497 1043 PANTHER SUPPRESSOR OF TY 5 33 1041 IPR039659 GO:0006357|GO:0032784
Dod09g1497 1043 MobiDBLite consensus disorder prediction 861 886 - -
Dod09g1497 1043 MobiDBLite consensus disorder prediction 802 926 - -
Dod09g1497 1043 PIRSF Spt5 2 1043 IPR017071 GO:0006357|GO:0032784
Dod09g1497 1043 CDD KOW_Spt5_1 282 319 IPR041973 -
Dod09g1497 1043 ProSitePatterns Ribosomal protein L24 signature. 433 450 IPR005825 GO:0003735|GO:0005840|GO:0006412
Dod09g1497 1043 MobiDBLite consensus disorder prediction 100 125 - -
Dod09g1497 1043 CDD KOW_Spt5_6 984 1041 IPR041980 -
Dod09g1497 1043 CDD KOW_Spt5_3 481 531 IPR041976 -
Dod09g1497 1043 Gene3D - 169 271 IPR036735 GO:0006355
Dod09g1497 1043 Pfam KOW motif 484 509 IPR005824 -
Dod09g1497 1043 Pfam KOW motif 715 744 IPR005824 -
Dod09g1497 1043 MobiDBLite consensus disorder prediction 669 718 - -
Dod09g1497 1043 MobiDBLite consensus disorder prediction 1 148 - -
Dod09g1497 1043 Gene3D - 278 320 IPR014722 -
Dod09g1497 1043 SMART nusgn_4 187 273 IPR006645 GO:0140673
Dod09g1497 1043 Gene3D - 484 533 IPR014722 -
Dod09g1497 1043 Gene3D - 424 481 IPR014722 -
Dod09g1497 1043 SUPERFAMILY Translation proteins SH3-like domain 687 751 IPR008991 -
Dod09g1497 1043 SMART kow_9 990 1017 IPR005824 -
Dod09g1497 1043 SMART kow_9 711 738 IPR005824 -
Dod09g1497 1043 SMART kow_9 278 305 IPR005824 -
Dod09g1497 1043 SMART kow_9 429 456 IPR005824 -
Dod09g1497 1043 SMART kow_9 481 508 IPR005824 -
Dod09g1497 1043 SMART kow_9 605 632 IPR005824 -
Dod09g1497 1043 SUPERFAMILY Translation proteins SH3-like domain 422 460 IPR008991 -
Dod09g1497 1043 SUPERFAMILY Translation proteins SH3-like domain 473 532 IPR008991 -
Dod09g1497 1043 Pfam Spt5 transcription elongation factor, acidic N-terminal 95 183 IPR022581 -
Dod09g1497 1043 CDD KOW_Spt5_2 430 480 IPR041975 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1497 Dod-Chr9 36635114 36642713 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1497 K15172 - gmx:100801380 1722.21