Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1496 ATGCAACTCACCAAGTTGTGTAGAATCACGCAACGCTTTCACCTTTGCACATGTTCAAACAACAACACATTCCCGTACCCATCACACTTGTATTCTTTAATAACGAATCACATTCGCCACGGATCACTGAAACGGGCTCTTTTTGTGTATAAACAAACTCGCCATGAAGGAATCTATGATTCCAGCGTGGTCCCTTTGTTGCTCAAAGCATGTGCAACGCTTTCCTTCCTTCACTGCTGTAAGGCCTTGCACGCAGAGTCCATCAAGTTCGGTTCATGCAGTGACGTGTTCATTGGGACTGCATTGGTTGGAAGTTATGCCAAATTTGGCGACCTTGGAGATTCCCGTATGGTGTTTGACACAATGCCTGAGAGAAACGTTGTCACGTGGAACGCCATGATCAATGGCTATTTGAGGATTGGGGACACAGATTCTGCTTCCCTTTTGTTTGAGGTGATGCCGGTGCAGACTCCAGTGTCCTGGAGTCAGATGATTGGTGGGTTTGCAAGGAATGGGGATACTGCGGCTGCTAGGAGTTTGTTTGATAAGGTTCCACATCAGTTGAAGAATGTGGTGACATGGACTGTGATGGTTGATGGGTATGCCAGGAAAGGGGAGATGGAAGCTGCCATGGAAGTCTTTGAGCAGATGCCAGTAAGGAACTGCTTTGTGTGGTCATCTATGGTCTGTGGATACTGCAAGATGGGCAACGTTGAGGAGGCTGAGGCCATTTTCAACCGGGTTCCAGTTCGGAATCCGGAGATATGGAATTCCATGATTTCTGGGTATGTCCAGAATGGATTTGGAGAGAAAGCACTGCAGGCTTTTGAGGCAATGAGAGGTGAAGGGTTTGAACCAGATGAGTACAGTATTGTTAGTGCTTTATCTGCTTGTGCTCAGCTTGGCCTCCTGGATGCTGGTAAGGAAATCCATCACATGATAAGACTTCAAAGGGTTAGAGTGAATCCCTTCCTTGTGAGTGTATTGGTTGACATGTATGCAAAATGCGGTGACTTGGTCAATGCAAGGAAGGTATTTGAAGAGTCCACTGAGAGGAACATCATCTGCTGGAATGCTATGATTTCAGGTTATGCCATCAATGGAAAATGCCATGAGGTTCTTGAGTTCTTTGGGAGAATGGAGGATTCAAATGCAAGGCCTGATTCAGTCACCTTTCTTATTGTACTCTCGGCTTGTGCTCATGGGGGTTTGGTCAGTGAAGCTTTGGAAGTGGCATCTAAAATGGAGGCATATCGAATTGAAATCGGCATCGAGCATTATGGATGCATGGTTGACCTCTTGGGAAGAGCAGGGAAATTAAAGGAGGCTTATGACTTGATAAAAGGAATGCCAATGAAACCTAATGAAACAGTTCTGGGGGCAATGCTTGGTGCATGCCGGATTCATTCAGATATGAAAATGGCTGAGCAAGTGATGAATGCGGTTGGTGCAGAATCTCTTTCAGGTGCTGATTCTCGCAATGTGCTTCTTTCAAATATCTATGCAGCTTCTGAAAAATGGGGGAAAGCTGAAAGGATGAGGAGGATCACAGTAGATGGAAGGACTCAAAAGGTAGCTGGGTGTAGTTCAGTCATCTTTAGTAACTCTGTTGGGGATTCATGTGTGAGTGCAGAAGTCCAACATCAAAAAAAGAATGGGCTATGTGCTACCTGCCAAGGAGAAAACACTTGA 1692 0.4557 MQLTKLCRITQRFHLCTCSNNNTFPYPSHLYSLITNHIRHGSLKRALFVYKQTRHEGIYDSSVVPLLLKACATLSFLHCCKALHAESIKFGSCSDVFIGTALVGSYAKFGDLGDSRMVFDTMPERNVVTWNAMINGYLRIGDTDSASLLFEVMPVQTPVSWSQMIGGFARNGDTAAARSLFDKVPHQLKNVVTWTVMVDGYARKGEMEAAMEVFEQMPVRNCFVWSSMVCGYCKMGNVEEAEAIFNRVPVRNPEIWNSMISGYVQNGFGEKALQAFEAMRGEGFEPDEYSIVSALSACAQLGLLDAGKEIHHMIRLQRVRVNPFLVSVLVDMYAKCGDLVNARKVFEESTERNIICWNAMISGYAINGKCHEVLEFFGRMEDSNARPDSVTFLIVLSACAHGGLVSEALEVASKMEAYRIEIGIEHYGCMVDLLGRAGKLKEAYDLIKGMPMKPNETVLGAMLGACRIHSDMKMAEQVMNAVGAESLSGADSRNVLLSNIYAASEKWGKAERMRRITVDGRTQKVAGCSSVIFSNSVGDSCVSAEVQHQKKNGLCATCQGENT* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1496 563 Pfam PPR repeat 100 127 IPR002885 -
Dod09g1496 563 Pfam PPR repeat 192 222 IPR002885 -
Dod09g1496 563 Pfam PPR repeat 255 284 IPR002885 -
Dod09g1496 563 Pfam PPR repeat 128 153 IPR002885 -
Dod09g1496 563 Pfam PPR repeat 426 451 IPR002885 -
Dod09g1496 563 Pfam PPR repeat 159 183 IPR002885 -
Dod09g1496 563 Pfam PPR repeat 224 247 IPR002885 -
Dod09g1496 563 Gene3D Tetratricopeptide repeat domain 328 562 IPR011990 GO:0005515
Dod09g1496 563 Gene3D Tetratricopeptide repeat domain 221 327 IPR011990 GO:0005515
Dod09g1496 563 Gene3D Tetratricopeptide repeat domain 28 155 IPR011990 GO:0005515
Dod09g1496 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Dod09g1496 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Dod09g1496 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Dod09g1496 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Dod09g1496 563 PANTHER OS01G0913400 PROTEIN-RELATED 31 531 - -
Dod09g1496 563 Gene3D Tetratricopeptide repeat domain 156 220 IPR011990 GO:0005515
Dod09g1496 563 TIGRFAM PPR: pentatricopeptide repeat domain 128 153 IPR002885 -
Dod09g1496 563 TIGRFAM PPR: pentatricopeptide repeat domain 192 223 IPR002885 -
Dod09g1496 563 TIGRFAM PPR: pentatricopeptide repeat domain 355 388 IPR002885 -
Dod09g1496 563 TIGRFAM PPR: pentatricopeptide repeat domain 255 288 IPR002885 -
Dod09g1496 563 TIGRFAM PPR: pentatricopeptide repeat domain 224 247 IPR002885 -
Dod09g1496 563 SUPERFAMILY TPR-like 220 354 IPR011990 GO:0005515
Dod09g1496 563 Pfam PPR repeat family 353 400 IPR002885 -
Dod09g1496 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 156 IPR002885 -
Dod09g1496 563 PANTHER BNACNNG13520D PROTEIN 31 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1496 Dod-Chr9 36627424 36629115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1496 60 539 Glycoside Hydrolase AT3G49170 29.675 3.21e-56 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1496 - - gmx:100802813 783.867