Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1475 ATGGGTGTGAGTGCCGCTTCCATACTGAACCAGCTCCTTCACGCCCGAAACCTCAAACCCCAGTCACGCGCCACCGCCGCCGCGGCCACCACCTCCGTCAACGCGGCGATCGCAGCCATCCTTGCCCACCTCAAATCCGGTCGCATCCGAAGAGCCGTCTCCGTCCTCTTCGCGTTCCCGGAGCCCTTCCCATTCTCCCTCTACGCCCACCTCTTCCACCTCTGCTCTAGCCCACGCGCCATCGTCGCCCTCCGCAAGGTCGAGTCCCACCTCCTCACCTTCTCCCCAAACGCCCCCACCTTCCTCCTCAACCGCGCCATCGAGGCCTATGGCAGATGCCACTACCTCCGCGACGCCCGCGAACTGTTCGACGAAATGCCCCATCCGGATGGAGGTTCTTGGAACGCCCTCATCACCGCTTATTCCCAAAGGGGTTTCCCAAACGAAGTCTTTGAGCTGTTTTTGCATATGAATAGGTCTGGCGTTTGTCCCAATAAGATTACTCTTGCTGGGGTTCTTAGGTCTTGTGCTGCGGCTTCTGAGATTCTTTTGTCTAGGCAGGTTCATGGCCTTGTTGTGAAGTTTGGGTTTTGTAGGAATGTGATTCTCGGGAGTGCATTTGTTGATGTTTATGGTAAGTGTGGGGTTATGGCTGATGCCCGCAGGATGTTTCATGAGATTCCAAGACCCAATGCTGTCACTTGGAATGTGATTGTGAGGAGGTATCTTGATGCCGGGGATGCGAGGGAGGCGGTTTTCTTGTTTTCAAGGATGCTTTCGGGTAGGATTAGGCCGTTGAATTTCACTTTTTCAAATGCTCTCGTTGCTTGTTCGAGCAAGTCTGGGCTGTATGAGGGGATGCAGATACATGGGGTTGTTGTGAGGTTGGGTCTTCAAGAGGATAATGTTGTTTCGAGCTCGCTTATTAACATGTATGTGAAGTGTGGTAAATTGGAGGATGGCTATGAGGTTTTTGACCAGCTTGGCTCCAAAGATTTGGTGTCTTGGACTTCAATTGTGTCGGGATATGCAATGAGTGGGAAAGCTTGGGAGGCAAGAAAGCTTTTTGATGAGATGCCGGAACGTAATGTGATCTCATGGAATGCAATGTTGGCAGGATATACCCATTTCTGCGAATGGTATGAGGCATTGGACTTTGTATATTTGATGCTTGGTACAATTAGAGATGTGGATCATGTAACTCTCAGTCTAATGTTGAATGTCTCTGCTGGTCTTTCAGATCATGAAATGGGGAAACAAGTTCATGGCTATGTCTATCGACATGGTTTTCACTCGAACCTTATGGTCAGCAATGCCCTTCTCGACATGTATGGTAAATGCGGGAACTTGAACAGTGCCAGAGTTTGGTTTAACCATATGAGTAATTGGCGTGACTGGGTTTCTTGGAATGCTTTGTTGGCGAGCTATGATCATCATCAGTTAAGTGAACAAGCACTGACAAAATTTTCAGAGATGCAGTGGGAGACAAAACCAACAAAGTATACCTTTGGAACCCTCTTGGCAGCATGTGCAAATACCTTTGCTCTTTACCCTGGCAAACAAATTCATGGATTCATCATTAGACATGGGTTTCAAATGGACATCATAATCAGAACTGCTTTGGTTTACATGTACTCTAAATGTCGTTGTCTTGAGTATGCTATCGTGGTCCTCAAGGGGGAACCTTCCAGAGATGTGGTCATTTGGAATACCATAATTTTGGGATGTTGTCACAATCATAGGGGTAAAGAGGCGCTCGAACTATTTCAAACGATGGAAGCTGAAGGTATCAAGCCGGACCATGTGACTTTTCAGGGTATTCTGCTTGCTTGTGTTGAAGAAGACCTTGTTGAGTTTGGTGCCAACTGCTTTAAGTCGATGAGCAATGATTACTGTGTCCTGCCTCGGATGGAGCATTATGACTGCATGATAGAACTCTACAGTCGGCATGGATACATGGATGAACTTGAGAATTTTCTCAAGACAATGCCAGTAGAGCCCACTATGCCAATGTTGAGAAGGGCCCTCGATGCTTGTCAAAAAAATGAGTACGCAAGACTGGGAGAATGGATTACAGACAAAATTAATGAATTTGAACATTAA 2103 0.475 MGVSAASILNQLLHARNLKPQSRATAAAATTSVNAAIAAILAHLKSGRIRRAVSVLFAFPEPFPFSLYAHLFHLCSSPRAIVALRKVESHLLTFSPNAPTFLLNRAIEAYGRCHYLRDARELFDEMPHPDGGSWNALITAYSQRGFPNEVFELFLHMNRSGVCPNKITLAGVLRSCAAASEILLSRQVHGLVVKFGFCRNVILGSAFVDVYGKCGVMADARRMFHEIPRPNAVTWNVIVRRYLDAGDAREAVFLFSRMLSGRIRPLNFTFSNALVACSSKSGLYEGMQIHGVVVRLGLQEDNVVSSSLINMYVKCGKLEDGYEVFDQLGSKDLVSWTSIVSGYAMSGKAWEARKLFDEMPERNVISWNAMLAGYTHFCEWYEALDFVYLMLGTIRDVDHVTLSLMLNVSAGLSDHEMGKQVHGYVYRHGFHSNLMVSNALLDMYGKCGNLNSARVWFNHMSNWRDWVSWNALLASYDHHQLSEQALTKFSEMQWETKPTKYTFGTLLAACANTFALYPGKQIHGFIIRHGFQMDIIIRTALVYMYSKCRCLEYAIVVLKGEPSRDVVIWNTIILGCCHNHRGKEALELFQTMEAEGIKPDHVTFQGILLACVEEDLVEFGANCFKSMSNDYCVLPRMEHYDCMIELYSRHGYMDELENFLKTMPVEPTMPMLRRALDACQKNEYARLGEWITDKINEFEH* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1475 700 Pfam PPR repeat 365 391 IPR002885 -
Dod09g1475 700 Pfam PPR repeat 106 126 IPR002885 -
Dod09g1475 700 Pfam PPR repeat 306 331 IPR002885 -
Dod09g1475 700 Pfam PPR repeat 233 260 IPR002885 -
Dod09g1475 700 Pfam PPR repeat 639 663 IPR002885 -
Dod09g1475 700 Pfam PPR repeat 438 461 IPR002885 -
Dod09g1475 700 Pfam PPR repeat 334 364 IPR002885 -
Dod09g1475 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Dod09g1475 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Dod09g1475 700 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 473 573 - -
Dod09g1475 700 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 486 - -
Dod09g1475 700 Gene3D Tetratricopeptide repeat domain 19 181 IPR011990 GO:0005515
Dod09g1475 700 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 486 - -
Dod09g1475 700 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 473 573 - -
Dod09g1475 700 Gene3D Tetratricopeptide repeat domain 182 282 IPR011990 GO:0005515
Dod09g1475 700 Gene3D Tetratricopeptide repeat domain 394 515 IPR011990 GO:0005515
Dod09g1475 700 Gene3D Tetratricopeptide repeat domain 285 361 IPR011990 GO:0005515
Dod09g1475 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Dod09g1475 700 Pfam PPR repeat family 132 177 IPR002885 -
Dod09g1475 700 Pfam PPR repeat family 564 611 IPR002885 -
Dod09g1475 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Dod09g1475 700 Gene3D Tetratricopeptide repeat domain 516 632 IPR011990 GO:0005515
Dod09g1475 700 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 574 698 - -
Dod09g1475 700 TIGRFAM PPR: pentatricopeptide repeat domain 133 165 IPR002885 -
Dod09g1475 700 TIGRFAM PPR: pentatricopeptide repeat domain 567 600 IPR002885 -
Dod09g1475 700 TIGRFAM PPR: pentatricopeptide repeat domain 334 364 IPR002885 -
Dod09g1475 700 TIGRFAM PPR: pentatricopeptide repeat domain 233 265 IPR002885 -
Dod09g1475 700 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 574 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1475 Dod-Chr9 36348738 36351846 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1475 28 699 Glycoside Hydrolase AT3G49170 28.905 6.13e-88 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1475 - - gmx:100775626 1119.76