Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1459 ATGTTCTTTGCAAATATGTCTCTCCTAACCCCCACTGACTTGTGGCTGATATTTGAGAAGCTTGACATGAATGGCGACGGCTTTGTGAGCCTTGATGAGCTCAATTGGCTGCTCCACAACATTGGCTTCCAATTAAGCTTGGATGAGCTTGAATCCCTTGTTGAAAAGAAGAGCCTGAACTTCAGTGAGTTTTTGTTCTTTTATGACTCCATATCCAAGAAAAACAATGGGGAGAGTAGAGGGGGTGATCATCATGACCATGATCATGATCACCATGATGATGAATTGGAGAACAACCTTGTGAAGACCTTCAAGGTTTTCGATTTGGATGGAGATGGATTCATCACCAGCCAAGAGCTCGAGTGTGTGTTGAAGAGGCTTGGCTTGTGGGATGAGACAAGTGGCAAGGATTGCAGGAGCATGATTCGGTTCTATGACACCAATTTGGATGGCCAGCTTGATTTCGAGGAGTTCAAGAACATGATGCTGCTTACCAAAGCGTGA 504 0.4464 MFFANMSLLTPTDLWLIFEKLDMNGDGFVSLDELNWLLHNIGFQLSLDELESLVEKKSLNFSEFLFFYDSISKKNNGESRGGDHHDHDHDHHDDELENNLVKTFKVFDLDGDGFITSQELECVLKRLGLWDETSGKDCRSMIRFYDTNLDGQLDFEEFKNMMLLTKA* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1459 167 CDD EFh 100 162 IPR002048 GO:0005509
Dod09g1459 167 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Dod09g1459 167 Gene3D - 11 74 - -
Dod09g1459 167 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Dod09g1459 167 SUPERFAMILY EF-hand 14 163 IPR011992 -
Dod09g1459 167 Pfam EF-hand domain pair 100 162 IPR002048 GO:0005509
Dod09g1459 167 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 6 166 - -
Dod09g1459 167 Gene3D - 84 167 - -
Dod09g1459 167 ProSiteProfiles EF-hand calcium-binding domain profile. 133 167 IPR002048 GO:0005509
Dod09g1459 167 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 166 - -
Dod09g1459 167 Pfam EF hand 18 34 IPR002048 GO:0005509
Dod09g1459 167 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
Dod09g1459 167 SMART efh_1 13 41 IPR002048 GO:0005509
Dod09g1459 167 SMART efh_1 137 165 IPR002048 GO:0005509
Dod09g1459 167 SMART efh_1 99 127 IPR002048 GO:0005509
Dod09g1459 167 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1459 Dod-Chr9 35930877 35932002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1459 5 163 EF-hand Containing Proteins AT1G21550 42.857 9.00e-35 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1459 K13448 - gmx:100527117 220.32