Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1442 ATGGCCACCGTGCCCACTCTCTCATATGCAGCTTACCTTCCTTCCTTCGCCGTCAAACCTCGTCACACCGACGCCAACAATGCCTTCTCCTCCTTTATTCCATCCCCTCTTTCGTCCTTCCCTCGCTTGCGACGACGTCGTTCCACACGCGCACCCGTTGTCGCTGCACTCGCGTCCGCGAAGGGAAACCTCATGGGTCGTGTTCGAAAGAGCCTCAGCGACTTCACTAGCTTGAACTACTGGGTTGTTCGCGACTACTACCGTCTCGTTAACTCCGTCAACTCCTTCGAACCCCTCATTCAGAAACTCTCCGACGAGCAGTTAACGACCAAGACGGTGGAGTTTCGCGAGAGGCTTGGGCGAGGGGAGACCCTTGCTCATATTCAAGCTGAGGCGTTCGCTGTTGTCCGTGAAGCTGCAAGGAGGAAACTTGGAATGCGCCATTTTGATGTCCAGATTATTGGCGGGGCAGTGCTGCATGATGGCTCCATTGCCGAGATGAAAACTGGGGAAGGGAAAACGTTGGTTTCTACATTAGCAGCTTATCTTAATGCCCTCACTGGTGAAGGTGTCCATGTGGTAACTGTCAATGATTATTTAGCTCAGCGTGATGCTGAATGGATGGGGCGTGTTCATCGTTTCTTAGGCCTTTCTGTTGGTCTTATTCAGAGGGGGATGAACTCTGAAGAGCGGAGATTCAACTATAGATGTGACATTACATATACCAATAACTCTGAACTTGGCTTTGATTATTTACGAGATAATCTTGCTGGAAATAGTGAAGATCTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCAATTGTTGATGAAGTGGATTCTGTCTTGATAGATGAAGGAAGAAATCCTTTGCTAATCAGTGGTGAGGCCAGTAAAGATGCTGCACGATACCCTGTTGCTGCAAAAGTAGCCGAACTGCTTGTGCAGGGCATTCATTACAAAGTGGAGCTTAAAGATAATTCAGTGGAGTTGACCGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACTAATGACCTTTGGGATGAAAATGATCCATGGGCTAGATTTGTGATGAATGCTTTAAAAGCTAAAGAGTTTTATCGCCGAGATGTGCAATACATTGTCAGAGATGGGAAGGCTTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCGAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTTGTTGCACAGATCACCTACCAGTCATTATTCAAGCTCTATCCAAAGTTGTCAGGAATGACTGGGACTGCAAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTTCAGATGCCAGTCATTGAAGTGCCTACAAATCTTCCTAATATTCGCAAAGATTTGCCTATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGTCGCCCTGTTTTAGTTGGGACAACTAGCGTAGAGAACTCTGAACTTTTGGCTGGTCTGCTTAGGGAATGGAATATTCCCCACAATGTCCTTAATGCTCGACCCAAGTATGCTGCAAGAGAAGCTGAAATTGTTGCACAGGCCGGAAGGAAACATGCCATTACCATCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGAGGGAATCCAAAAATGCTTGCCAGAGAAATTATAGACGATAACATACTTCCAATTTTGACACGACAGGATCCAAATCTTGAACCTTCTAATGAGAATATTTCACAAAAGGTGCTTCCAAAGATAAAGGTTGGATCATCATCACTGGCCTTACTGGCTAAGACAGCGTTAATGGCCAAATATGTATCCAAAAGTGAGGGTAGAAGTTGGACATATCAAGAGACTAAATCTTTTATCCTGAAGGCTGTCGAGTTGAGTCTGTCACACAGTTTGAAGGAGCTGGAGAAGCTTGCTAATGAAGAATCTGATTTTTACCCTCTTGGGCCAACAGTAGCACTTGCCTATCTGTCAGTTTTGAAAGATTGTGAAGAACACTGTTTGCATGAAGGGTCTGAGGTAAAAAGGCTTGGAGGCCTTCATGTAATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGCTTCGTGGCAGAGCAGGAAGGCAGGGGGATCCAGGATCAACACGATTTATGGTCAGCTTGCAGGACGAGATGTTTCAAAAGTTCAACTTTGACACTGAATGGGCTGTGAGACTTATCTCCAAGATTACAAACGAGGAGGATATGCCAATCGAGGGTGATGCCATTGTAAAGCAGCTCTTGGGGTTGCAAGTCAATGCAGAAAAGTTCTTCTTCAGCATAAGAAAGAACCTGGTTGAGTTTGATGAAGTGTTGGAGGTGCAGCGGAAGCATGTTTATGACCTAAGGCAGTTAGTCTTAACAGGAGATGATGAAAGCTGTTCCCAACACATATTCCAGTTAGTGACTTCGAATTCCCAAACTTGCTTACACTTGTGCCTATCCTATCTGGGGAATGATGACCCATGTTTTGCTTTGGACTTGCCATTAAGTTCTTGTGTGATTTATATAGTGAGCTTTAGCTAG 2625 0.4491 MATVPTLSYAAYLPSFAVKPRHTDANNAFSSFIPSPLSSFPRLRRRRSTRAPVVAALASAKGNLMGRVRKSLSDFTSLNYWVVRDYYRLVNSVNSFEPLIQKLSDEQLTTKTVEFRERLGRGETLAHIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNSEERRFNYRCDITYTNNSELGFDYLRDNLAGNSEDLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLVQGIHYKVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPVLVGTTSVENSELLAGLLREWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAREIIDDNILPILTRQDPNLEPSNENISQKVLPKIKVGSSSLALLAKTALMAKYVSKSEGRSWTYQETKSFILKAVELSLSHSLKELEKLANEESDFYPLGPTVALAYLSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNEEDMPIEGDAIVKQLLGLQVNAEKFFFSIRKNLVEFDEVLEVQRKHVYDLRQLVLTGDDESCSQHIFQLVTSNSQTCLHLCLSYLGNDDPCFALDLPLSSCVIYIVSFS* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1442 874 Pfam SecA preprotein cross-linking domain 303 407 IPR011130 GO:0016020|GO:0017038
Dod09g1442 874 SUPERFAMILY Pre-protein crosslinking domain of SecA 295 416 IPR036670 GO:0016020|GO:0017038
Dod09g1442 874 SMART SecA_DEAD_2 75 451 IPR011115 GO:0005524|GO:0016020|GO:0017038
Dod09g1442 874 ProSiteProfiles SecA family profile. 68 772 IPR014018 -
Dod09g1442 874 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 71 836 - -
Dod09g1442 874 Pfam SecA Wing and Scaffold domain 770 840 IPR011116 GO:0016020|GO:0017038
Dod09g1442 874 ProSitePatterns SecA family signature. 551 566 IPR020937 GO:0006605|GO:0006886|GO:0016020
Dod09g1442 874 Gene3D - 297 417 - -
Dod09g1442 874 PRINTS SecA protein signature 235 255 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dod09g1442 874 PRINTS SecA protein signature 425 442 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dod09g1442 874 PRINTS SecA protein signature 388 410 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dod09g1442 874 PRINTS SecA protein signature 462 475 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dod09g1442 874 PRINTS SecA protein signature 128 152 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dod09g1442 874 PRINTS SecA protein signature 166 180 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dod09g1442 874 PRINTS SecA protein signature 182 192 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dod09g1442 874 Pfam SecA DEAD-like domain 83 450 IPR011115 GO:0005524|GO:0016020|GO:0017038
Dod09g1442 874 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 317 IPR014001 -
Dod09g1442 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 464 IPR027417 -
Dod09g1442 874 Coils Coil 646 666 - -
Dod09g1442 874 Hamap Protein translocase subunit SecA [secA]. 67 873 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dod09g1442 874 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 71 836 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dod09g1442 874 CDD SF2_C_secA 469 740 IPR044722 -
Dod09g1442 874 SMART SecA_PP_bind_2 296 407 IPR011130 GO:0016020|GO:0017038
Dod09g1442 874 TIGRFAM secA: preprotein translocase, SecA subunit 93 838 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dod09g1442 874 Gene3D Helical scaffold and wing domains of SecA 775 848 - -
Dod09g1442 874 CDD DEXDc_SecA 107 463 - -
Dod09g1442 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 753 IPR027417 -
Dod09g1442 874 Gene3D - 466 772 IPR027417 -
Dod09g1442 874 SUPERFAMILY Helical scaffold and wing domains of SecA 775 836 IPR036266 -
Dod09g1442 874 Gene3D - 87 464 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1442 Dod-Chr9 35795830 35809763 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1442 K03070 - gmx:100793437 1398.65