Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1367 ATGGATTTAACCAAAATCCAGTTAGCTCTACGCTCTTGTGTGAGCTTTCAAGCTATTAAACGCGCCAAATCACTTCACTCTCACGTTATAAAACTCGGCCTTCGCAGTCACGTTTTCCTCCTAAACCACATGATCTCTGTTTACGCAAAGTGTCTACATCTCGATGAAGCGCGAAGCCTGTTCGACGAAATGCCTCACAGAAACGTCATTTCTTGGACTACAATGCTCTCCGCATACACCAATTCTGGGAGGCCTCATGAGGCTCTTTCACTCTACAGTCACATGATGGAATCCCAGAAAGAGCAACCCAATAGGTTCTTGTACTCTGCGGTTCTCAAGGCTTGTGGTCTGTTGGGAAATGCTGAACTGGGTCAGGTGGTTCACCAACGTATATCTGAAGCGGAGTTAGAATTTGACACTGTTCTGATGAATGCGCTCTTGGACATGTACGTCAAATGTGGGAACTTGAGGGATGCGCAGCGAGTTTTCCATGAAATCCCTCGTAAGAACTCGACTTCGTGGAACACCCTCATTCTGGGTCATGCGACACGAGGCTTGCTTGGTGATGCGCTGAACCTGTTTGATCAAATGCCAGAACCTGATCTTGTTTCTTGGAACACCATCATTGCTGGTCTTGCGGATAATGGTTGCCCGTATGCTTTGCAATTTGTTGCTACGATGCACTGGAAATGCTTTAAACTAGATGAATTCACGTTCCCCTGTGCTCTCAAAGCATGTGGTCATCTTGGTGACTCGACCATGGGGAAACAGATTCATTGCTGTATTATCAAGTCGGGGTTTGAGTCTTGCTGTTACTGTACATCGGCTTTGATTGATATGTACTCAAATTGCAAGTTGTTGGATGAAGCAGTGACGATATTTGATCAATTCTCCAGCAACTCCCCTGTTGCTGAAAGCTTGGCACTTTGGAATTCTATGCTCTCTGGGTATGTTTCCAATGGAGATTATGCCAAGGCTTTTAGTCTGATTGCACATATGCATCATGTTGGTGCACATTTTGATTCCTATACATTTAGTATTGCTTTAAAGGTTTGCATGTACTTCCAGAACTTGGGGCTGGCATCTCAAGTACATGGTTTGGTCATCACCAGTGGCTATCAGTTGGATTATGTTGTTGGAAGCATTCTTATTGATCTTTATGCAAACCAGGGCAATATTAACAATGCATTAAGATTGTTTGAAAAGTTGCCGGATAAAGATGTTGTGGCTTGGTCTAGTTTGATTGCTGGTTGTGCTAAATTCGGCTTAGATGTGTTAGCTTTGTCCCTCTTTGTGGATATGGTTCATTTGGATCTTGAGATTGATCACTTTGTTCTTTCAATTGTTCTGAAAGTTTCTTCAAGCTTGGCATCTCATCGGAGTGGAAAACAAATTCATGCTTTTTGTCTTAAGAAGGGGTATGAATCAGAGAGAGTTATTACAACTGCTCTTATCGATATGCACTCAAAATGTGGTGAGATTGAGGATGCCTTAGCTTTGTTTCATGGTCTTTCAAAAACAGATACCATGTGTTGGACGGGGATTATTGTGGGATGTGCACAAAATGGAAGAGCAGATGAAGCAATTAGTCTTTTGCATAAGATGATAGAATCTGGTAAAAAACCAAATGAAATCACCATCTTAGGTGTTCTTACTGCTTGTAGACATGCTGGTCTAGTTGAAAAGGCGTGGACCATATTTAATTCTATTGAAACAGAGCATGGATTGATACCATGCCCAGAACATTACAATTGTATGGTTGATCTACTTGGTCAAGCAGGATGTTTCAAAGAAGCATTGAAATTGATTAGTGACATGCCATTTAAGCCTGACAAAACAGTATGGTATTCCTTGCTTGGTGCCTGTGGAACTCACAAGGACCAATATCTTGCAACTATTGTTGCTGACCATCTTCTTAATACCTTTCCAGAAGATGCTTCTGTTTATGTAATTGTGTCAAATGTGTATGCAACTCTTGGAATGTGGGATAGTTTAAGCAAAGTAAGGGAAGCTGTCAAAAAAGTAGGCTTAAAAGGAGCTGGAAAAAGCTGGATTGAGATCTCATGTTGA 2070 0.4174 MDLTKIQLALRSCVSFQAIKRAKSLHSHVIKLGLRSHVFLLNHMISVYAKCLHLDEARSLFDEMPHRNVISWTTMLSAYTNSGRPHEALSLYSHMMESQKEQPNRFLYSAVLKACGLLGNAELGQVVHQRISEAELEFDTVLMNALLDMYVKCGNLRDAQRVFHEIPRKNSTSWNTLILGHATRGLLGDALNLFDQMPEPDLVSWNTIIAGLADNGCPYALQFVATMHWKCFKLDEFTFPCALKACGHLGDSTMGKQIHCCIIKSGFESCCYCTSALIDMYSNCKLLDEAVTIFDQFSSNSPVAESLALWNSMLSGYVSNGDYAKAFSLIAHMHHVGAHFDSYTFSIALKVCMYFQNLGLASQVHGLVITSGYQLDYVVGSILIDLYANQGNINNALRLFEKLPDKDVVAWSSLIAGCAKFGLDVLALSLFVDMVHLDLEIDHFVLSIVLKVSSSLASHRSGKQIHAFCLKKGYESERVITTALIDMHSKCGEIEDALALFHGLSKTDTMCWTGIIVGCAQNGRADEAISLLHKMIESGKKPNEITILGVLTACRHAGLVEKAWTIFNSIETEHGLIPCPEHYNCMVDLLGQAGCFKEALKLISDMPFKPDKTVWYSLLGACGTHKDQYLATIVADHLLNTFPEDASVYVIVSNVYATLGMWDSLSKVREAVKKVGLKGAGKSWIEISC* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1367 689 SUPERFAMILY TPR-like 47 663 IPR011990 GO:0005515
Dod09g1367 689 TIGRFAM PPR: pentatricopeptide repeat domain 42 68 IPR002885 -
Dod09g1367 689 TIGRFAM PPR: pentatricopeptide repeat domain 70 104 IPR002885 -
Dod09g1367 689 TIGRFAM PPR: pentatricopeptide repeat domain 583 606 IPR002885 -
Dod09g1367 689 TIGRFAM PPR: pentatricopeptide repeat domain 511 544 IPR002885 -
Dod09g1367 689 TIGRFAM PPR: pentatricopeptide repeat domain 309 335 IPR002885 -
Dod09g1367 689 Pfam PPR repeat 482 502 IPR002885 -
Dod09g1367 689 Pfam PPR repeat 381 407 IPR002885 -
Dod09g1367 689 Pfam PPR repeat 142 170 IPR002885 -
Dod09g1367 689 Pfam PPR repeat 275 296 IPR002885 -
Dod09g1367 689 Pfam PPR repeat 409 436 IPR002885 -
Dod09g1367 689 Pfam PPR repeat 582 606 IPR002885 -
Dod09g1367 689 Pfam PPR repeat 173 199 IPR002885 -
Dod09g1367 689 Pfam PPR repeat 511 539 IPR002885 -
Dod09g1367 689 Gene3D Tetratricopeptide repeat domain 170 224 IPR011990 GO:0005515
Dod09g1367 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Dod09g1367 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Dod09g1367 689 PANTHER BNAC03G28070D PROTEIN 21 83 - -
Dod09g1367 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 84 684 - -
Dod09g1367 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 83 - -
Dod09g1367 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Dod09g1367 689 Gene3D Tetratricopeptide repeat domain 2 169 IPR011990 GO:0005515
Dod09g1367 689 PANTHER BNAC03G28070D PROTEIN 84 684 - -
Dod09g1367 689 Gene3D Tetratricopeptide repeat domain 225 357 IPR011990 GO:0005515
Dod09g1367 689 Gene3D Tetratricopeptide repeat domain 358 466 IPR011990 GO:0005515
Dod09g1367 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 103 IPR002885 -
Dod09g1367 689 Pfam PPR repeat family 309 352 IPR002885 -
Dod09g1367 689 Pfam PPR repeat family 67 115 IPR002885 -
Dod09g1367 689 Gene3D Tetratricopeptide repeat domain 481 688 IPR011990 GO:0005515
Dod09g1367 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Dod09g1367 689 Pfam E motif 625 686 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1367 Dod-Chr9 34963356 34968434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1367 1 687 Glycoside Hydrolase AT3G49170 30.000 3.76e-108 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1367 - - gmx:100780678 1090.1