Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1227 ATGCGCGTCGCCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTCTGGCGGTGGTTTGTGTGGTTTTGCCGGCGATCGGTTTCGTGATTCGCCGTAAATGGCGGCTTGCGGTGGCTAGGAAGAAGGAGATCAAGAGGCTTCTGACTTTGGCAGCGGAGGAGACCGCCAGGGCCGAGAGAGAGGCGTTTTTCGCGTACGGCGCGGCGGTTCCCGCCGTGAATAGCAATCACTGCGCCGTGTGCTATGTTCCCGCCACCCGGCGCTGCGCTCAGTGCAAATTGGTTCGCTACTGTTCGTTTGAATGTCAAACTGTTCATTGGCGTCAAGGTCACAAATTAGAATGCCGTCCTCCCAGCATTACTCCGGTGAGTGATGATTTAGTTAGTGATCTCAGCAAGAGGGTAGCAGAACAAGACCTCTCTGGAATCCCTGCTGAGAATTCCGAAAGTGAAGGCACACAGTGTAAAACATCCAATGAAAGCCTCTCAGTTTCAGACACCGGCCTTTCTCTTAAGGGTTCATGTGGAAAGAATGATAATGGAAGAGTTGAGTCCCTTGCAGAGGGAACTATAACAGATTCTAATTCTGAATTATCTAGTAACTCATTTTCTGGATTCTCAGCTTCCGTGAGTGGTAGTGAGTCATCTGATGATTCCTCTGTCTGTGAGAGTATCATCTCAAATGAGCGTGACCAATCTGAGGAGCATATTTCGGTTGATTCCACCCTTGACATTCCTGACAGCACTTCAGGTGATAGTAATAGCATGGGTGTAGCTATGTCTCCTTCACCAAAGTTTGCTAGTTTGGTTGATTCAGTGGATGGTTTTTCTACAATGCGTAAATTAAATCAAAGTAGACCTGGTTTTAGTAAAGAAGAGAGTAAGCTTGCATCAAATGGCACTCGAGGTACAAGTATGTGGAAGGGGGCAACAATTGAGCCTTCTGCAGTGTATTCTGGATTTTGGGATAAAACTCTTGATTCAAGTGGGATCAAAGATGATGCTAATGATGACCCTCGTCGATCCCATTGTGATGAATCCACTGGCAATAAGGAATCTGATTCTGGCCCTTCATTTCACTTTTCATTCAGTAACATGCGTACTTTGCATGTACAAGATATTGAGGCAAAGGATTGTTTATCTGATGGTGCTTCTGCAAATTCTGTTGGGAACAATGTGCCCTCTCCGGGATCAGCATCATCAGAGAATGACAGAATGAATTCTTTAAAGGCTACCAATCTTTCAATCATGAATAGCAAAGGTTCCAATGTTGCAAGCTATGTTACTGTCCCTGGTTCTGAATCCAATCAATTGGAACCTAAAGACAGCTCTAGGCCATCTTTATCTTGTTTCTCCCCTCCGTCCACCAGTCTTAGCAAAGATTCAGGCCGTGCAGATGCCTTGAGCATCCATAACTTGCAATCAGCTGTTTCTATGGTATCAAATCATGTTGTGGGCTACCATGACAGCACTTTGAAATCTGCTGAAACTAGATGCCTGCCCCGTGAACATGCTGATTCTAATTTAGCTTCTAGAACTGAAGGCCATTTAAAATCGAGTACAAAACGTGTGAATAATAGCATTCAATCTGCCACTGATACTTCCTCTCAGGGTGTTAGCCGTTCTGCAAATCCTAAGAGTGGCTTGAAAACTTCTGTTTTAAAAGTTGTGGATCAATTTAGAGGATCGAATTTGTCAAAACGATTTCCATTAGCTGTTGGCATTGGTAGTGACACTGCTGGAAGATACAGTGACAAGGGTCTTTTTCCTTATGAATTGTTCGTCAAGATTTATAATTCAAACAAGGTGGAGTTGCGCCCATTTGGTCTTATAAATTGCGGAAACAGCTGTTATGCTAATGCTGTACTTCAGTGCTTAGCATTTACTCCACCCCTGACTGCTTATTTTCTTCAAGGACTACATTCCAAAGCATGTGCAAATAAAAAATGTTGTTTCACCTGTGAGTTTGAAAGTTTGATTTTGAGGTCAAAGGATACAAAACCCCCCCTCTCTCCTAAGGGCTTACTTTCTCAACTACGGAGTATTGGGAGTCAACTTGGCAATGGCAGAGAAGAAGATGCACATGAATTTCTAAGGCATGCTATTGACACAATGCAATCCATTTGCCTTATGGATGCGAGGGTTAATGCATCAGGCTCCCCAGAAGAGGACACCACTTTAATGGGTCTAACATTTGGAGGCTTCCTTAGATCAAAGATAAAATGCATGAAATGTGGAGGGAAGTCTGAGCGTCAGGAAAGGATGATGGATCTGACGGTTGAGATAGAAGGAGAGATAGCAACCCTGGAGGAAGCTCTTCGACGGTTTACAAGTACTGAGGCTTTGGATGGAGAAAACAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCGCCTAATGTTCTTACAATTGCATTGAAAAGATTTCAGTCTGGAAAATTTGGGAAGCTCAACAAGCCTATTCAATTTCCGGAAATACTTGACTTGGCTCCTTTCATGAGTGGGACTAGTGATAAATCGCCTATATACCGGCTGTATGGGGTAGTTGTTCACTTGGACATCATGAATGCCGCCTTTTCAGGTCACTATGTGTGCTATGTGAAGAATATCCAAAACAAGTGGTTCAAGGTTGATGACAGTGTGGTGACGGCTGTTGATTTAGAGAGAGTCTTGACGAAAGGAGCATACATGCTTTTTTATGCAAGGTGCTCACCAAGGGCCCCAAGATTAATCAGGAGCAGAGTAGGATCCTCAGATTCGAAAAGTAAAGCCAGTGGAAAGACTCTTACAATGAAATCACGAAATATATCAACAAATTCTGGTGCTGCTGAATATATCAGCAGTTCGATTTCTCCAGATGTTTCACCGACCTTAGACTCTTTCTATTCAAAGTTCCACCACCTGAAAAGGATTTTAGAAGAAGACTCGTCAAGTGATAATTCATCCCTAATCAGCAGCAATTCTGATGAAGGCTCTTGCAGTACTGACAGCACCCGTGATTCAACGGGCACAGATGACTTGTCCGATTATATTTTTGGTGATTCAGGTCATGGTTGGAGTGGCATGTGGAGGAATTCTGAATGTGACACTTCATCCTCCTCCTCATCTTCTCCCTTGAACTCTAGGCATTCACCCCTATCTGACATGGACCGGTATGATTCAGTTTCGCCAGATGCAACTGGTTTGCGAATTCCCACTGGTTCAAGTGCGGATATGGATGGTCCTTTGTACAGGAACAGACTGGTGTATGTTGAAAGAAAGGGAGGAGTTGTTCCTCTTTCGCATTCTGACACTTATTTACACCATAGGAAGTTAGATAGTAGTAGGATTAGCAGCAACAGTAATTTTAGGGAGACTGACTCTTCTCAGAGACTAGGATCTAACCATTTTAATGACATAAACTCTGGTGTATCTTGTAGAAAGTCGAGGGAAAGAACGGATTGA 3471 0.4379 MRVAGDLGFSSLVLLAVVCVVLPAIGFVIRRKWRLAVARKKEIKRLLTLAAEETARAEREAFFAYGAAVPAVNSNHCAVCYVPATRRCAQCKLVRYCSFECQTVHWRQGHKLECRPPSITPVSDDLVSDLSKRVAEQDLSGIPAENSESEGTQCKTSNESLSVSDTGLSLKGSCGKNDNGRVESLAEGTITDSNSELSSNSFSGFSASVSGSESSDDSSVCESIISNERDQSEEHISVDSTLDIPDSTSGDSNSMGVAMSPSPKFASLVDSVDGFSTMRKLNQSRPGFSKEESKLASNGTRGTSMWKGATIEPSAVYSGFWDKTLDSSGIKDDANDDPRRSHCDESTGNKESDSGPSFHFSFSNMRTLHVQDIEAKDCLSDGASANSVGNNVPSPGSASSENDRMNSLKATNLSIMNSKGSNVASYVTVPGSESNQLEPKDSSRPSLSCFSPPSTSLSKDSGRADALSIHNLQSAVSMVSNHVVGYHDSTLKSAETRCLPREHADSNLASRTEGHLKSSTKRVNNSIQSATDTSSQGVSRSANPKSGLKTSVLKVVDQFRGSNLSKRFPLAVGIGSDTAGRYSDKGLFPYELFVKIYNSNKVELRPFGLINCGNSCYANAVLQCLAFTPPLTAYFLQGLHSKACANKKCCFTCEFESLILRSKDTKPPLSPKGLLSQLRSIGSQLGNGREEDAHEFLRHAIDTMQSICLMDARVNASGSPEEDTTLMGLTFGGFLRSKIKCMKCGGKSERQERMMDLTVEIEGEIATLEEALRRFTSTEALDGENKYHCVRCKSYEKAKKKLTVSEAPNVLTIALKRFQSGKFGKLNKPIQFPEILDLAPFMSGTSDKSPIYRLYGVVVHLDIMNAAFSGHYVCYVKNIQNKWFKVDDSVVTAVDLERVLTKGAYMLFYARCSPRAPRLIRSRVGSSDSKSKASGKTLTMKSRNISTNSGAAEYISSSISPDVSPTLDSFYSKFHHLKRILEEDSSSDNSSLISSNSDEGSCSTDSTRDSTGTDDLSDYIFGDSGHGWSGMWRNSECDTSSSSSSSPLNSRHSPLSDMDRYDSVSPDATGLRIPTGSSADMDGPLYRNRLVYVERKGGVVPLSHSDTYLHHRKLDSSRISSNSNFRETDSSQRLGSNHFNDINSGVSCRKSRERTD* 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1227 1156 MobiDBLite consensus disorder prediction 924 942 - -
Dod09g1227 1156 SUPERFAMILY Cysteine proteinases 603 914 IPR038765 -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 142 164 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 1118 1156 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 502 518 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 1118 1146 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 280 307 - -
Dod09g1227 1156 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 1136 - -
Dod09g1227 1156 SUPERFAMILY HIT/MYND zinc finger-like 72 116 - -
Dod09g1227 1156 Coils Coil 40 60 - -
Dod09g1227 1156 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Dod09g1227 1156 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 20 1136 - -
Dod09g1227 1156 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 607 912 IPR028889 -
Dod09g1227 1156 Pfam MYND finger 77 114 IPR002893 -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 431 462 - -
Dod09g1227 1156 Gene3D - 67 117 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 519 545 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 139 164 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 1039 1083 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 502 545 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 921 942 - -
Dod09g1227 1156 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 608 623 IPR018200 GO:0004843|GO:0006511
Dod09g1227 1156 MobiDBLite consensus disorder prediction 985 1016 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 328 358 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 189 259 - -
Dod09g1227 1156 Pfam Ubiquitin carboxyl-terminal hydrolase 607 909 IPR001394 GO:0004843|GO:0016579
Dod09g1227 1156 MobiDBLite consensus disorder prediction 1039 1053 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 241 259 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 986 1014 - -
Dod09g1227 1156 Gene3D Cysteine proteinases 599 920 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 384 404 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 189 226 - -
Dod09g1227 1156 MobiDBLite consensus disorder prediction 328 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1227 Dod-Chr9 33318169 33326413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1227 587 959 Miscellaneous Gene Families AT4G31670 47.326 1.00e-117 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1227 K11855 - gmx:100795674 1449.88