Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1171 ATGTCCGTTTCCATTACTACCTCTTTCTCGGGCACCAAATCGGAGACTTCACTGCTGCTCCCATGCTCTTCCTCCTCCTCTTCGGCTTCGTCCAGTGCGACCCATTTATCAGTTGTAGGCAAAAACAGAGGGACCTTCGTTCAGAGAGGAGTGATTCGCTGCGATGCATCTGCACCTCCTGATGCCTTGCTTAACACTGATACTCCTATTCCTACAAATGCTACCACCCTCTCCTCTCTTGACCAGCACAAGAACACTTCTGCACCTAATAGGTATACGAAGGAAAGGACCAGCATCGTGGCTATTGGGCTCAGTGTGCACACTGCACCTGTAGAAATGCGCGAAAAACTTGCCATTCCGGAAGCAGAATGCCCTAGAGCTATTGCAGAGCTGTGTAGTCTTAACCATATTGAAGAAGCAGCTATTCTGAGCACCTGCAACCGAATGGAGATATATGTTATTGCTATTTCCCAACATCGAGCTGCCAAAGAAGTCATGGAATGGATGTCAAATACAAGTTCCATTCCTGTTTCAGAGCTTCGCCAGCACCGGTTTATACTTCACAACAAAGATGCCACACAACATCTTTTTGAAGTATCAGCAGGTCTTGACTCTGTTGTATTGGGAGAAGGTCAAGTCCTTGCTCAGGTTAAGCAAGTTGTCAAAGTTGGACAAGGGGCTAATGGCTTTGGGAGACACATTAGTTCTCTATTCAAATATGCAATTGCTGTTGGGAAGAGGGTTAGAACTGAGACCAATATTGCTGCTGGTGCAGTTTCTGTAAGCTTAGCTGCTGTTGAATTGGCCTTTAGGAAGCTACCTGAAGTTTCACATGATAATGCCAGGATGTTGATTGTTGGTGCTGGCAAGATGGGGAAGCTTGTAATCAAACATTTGGTTGCAAAAGGTTGCACAAAGATGGTTGTTGTCAATAGAACTAAGAAGAGAGTTGCTGAAATATGTGAAGAATTGAAGGATGTTGAGATAATATTCAAACCCCTTTCGGAAATGCTTACCTGTGCTGGTGAAGCAGATGTAGTTTTCACCAGCACATCGTCGAAAACCCCGTTATTCTTGAAAGATGATGTTCATAACCTTCCTCCTGCAAGTCAAGATGTTGGAGGCCATCGCCTTTTCTTCGATATCTCTGTTCCTCGAAACGTGGGGTCATGTGTCTCAGATATCGAGTCTGTGCGAGTTTATAATGTTGATGACATTAAAGAGGTTGTGGCTGCTAACAAAGAGGATAGACTAAGAAAAGCAATGGAAGCTCGGGAACTCATCGCAGAAGAATTGAAACAATTTGAAGCTTGGAGGGATTCACTTGAAACTGTCCCTACTATTAAGAAATTGAGGGCTTATGCTGAAAGAATCAGGCTTGGTGAGCTTGAGAAATGCTTAGGTAAGATGGGTGATGAGACTGAGATCTCAAAGAAGACACTGAGAGCTGTGGATGATCTTAGTCGGGGTATAGTGAATAAGTTGCTTCATGGACCAATGCAACACTTGAGGTATGATGGGAGTGACAGCAGGACCTTAAGTGAGACTCTTGAGAACATGCATGCTTTGAATAGAATGTTTGGCCTTGACACTGAAATATCTGTTTTGGAGCAGAAGATTCGAGCAAAGATGGAAGAAAACCGCAAGTGA 1650 0.4412 MSVSITTSFSGTKSETSLLLPCSSSSSSASSSATHLSVVGKNRGTFVQRGVIRCDASAPPDALLNTDTPIPTNATTLSSLDQHKNTSAPNRYTKERTSIVAIGLSVHTAPVEMREKLAIPEAECPRAIAELCSLNHIEEAAILSTCNRMEIYVIAISQHRAAKEVMEWMSNTSSIPVSELRQHRFILHNKDATQHLFEVSAGLDSVVLGEGQVLAQVKQVVKVGQGANGFGRHISSLFKYAIAVGKRVRTETNIAAGAVSVSLAAVELAFRKLPEVSHDNARMLIVGAGKMGKLVIKHLVAKGCTKMVVVNRTKKRVAEICEELKDVEIIFKPLSEMLTCAGEADVVFTSTSSKTPLFLKDDVHNLPPASQDVGGHRLFFDISVPRNVGSCVSDIESVRVYNVDDIKEVVAANKEDRLRKAMEARELIAEELKQFEAWRDSLETVPTIKKLRAYAERIRLGELEKCLGKMGDETEISKKTLRAVDDLSRGIVNKLLHGPMQHLRYDGSDSRTLSETLENMHALNRMFGLDTEISVLEQKIRAKMEENRK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1171 549 TIGRFAM hemA: glutamyl-tRNA reductase 99 510 IPR000343 GO:0008883|GO:0033014|GO:0050661
Dod09g1171 549 PANTHER GLUTAMYL-TRNA REDUCTASE 4 549 - -
Dod09g1171 549 Coils Coil 411 431 - -
Dod09g1171 549 Pfam Shikimate / quinate 5-dehydrogenase 268 409 IPR006151 -
Dod09g1171 549 Gene3D - 97 257 IPR036343 GO:0008883|GO:0033014|GO:0050661
Dod09g1171 549 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 4 549 - -
Dod09g1171 549 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 257 417 IPR036291 -
Dod09g1171 549 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 102 252 IPR015895 GO:0008883|GO:0033014|GO:0050661
Dod09g1171 549 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 98 254 IPR036343 GO:0008883|GO:0033014|GO:0050661
Dod09g1171 549 CDD NAD_bind_Glutamyl_tRNA_reduct 99 421 - -
Dod09g1171 549 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 423 529 IPR015896 GO:0008883|GO:0033014|GO:0050661
Dod09g1171 549 Hamap Glutamyl-tRNA reductase [hemA]. 98 527 IPR000343 GO:0008883|GO:0033014|GO:0050661
Dod09g1171 549 ProSitePatterns Glutamyl-tRNA reductase signature. 195 218 IPR018214 GO:0008883
Dod09g1171 549 Gene3D - 258 410 - -
Dod09g1171 549 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 421 525 IPR036453 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1171 Dod-Chr9 32541856 32544279 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1171 K02492 - gmx:100782247 801.201