Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1131 ATGGGTGGCACTGTTGTTTCTCAGTTCCTGCTTCTATCTTCATGTTCTTCTCCACGCTTGTTCGCTCCTTCACTGTCGTGTGCTGCCTCAACCCTCCTCCATTCTCGCCTCTCATGCCCACGCCCGCGCCCTTCCATCCGCGCGTGCACCACCACCGCATCTGTTACTTCCTCAGACACACTCCCTCCTCCAACCCCTCCAAAGAAGCGGGTAGTGTCGGGAGTGCAGCCAACTGGGTCAATTCACCTTGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCACTTCAGAATACGTATGATACACTTTATTTCATTGTGGACCTCCACGCGATTACATTACCTTATGATGTACAACAATTATCTAAGGCTACAAGGTCAACTGCAGCTATTTATCTGGCATGTGGAGTGGATCCTTCGAAGGCTTCTGTTTTTGTACAGTCTCATGTTCAAGCGCATGTAGAATTGATGTGGTTGCTAAGTTCTGCAACACCAATTGGCTGGTTGAACAAAATGATACAGTTCAAAGAGAAATCTCGCAAGGCGGGTGACGAAGAAGTAGGGGTTGCCCTTTTGACATATCCTGTTCTCATGGCTTCTGATATACTTCTTTATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACCCGTAACTTAGCTGAACGGATTAACAATTTATATGGAGGAAGAAAATGGAAGAAATTAGGCGGCCGAGGTGGTGCTATATTTAAGGTTCCAGAGCCTCTTATACCTCCAGCTGGAGCCCGAATTATGTCCCTAACAGATGGCCTCTCCAAGATGTCAAAGTCTGCTCCTTCTGATCAGTCCAGAATCAATATTCTTGATCCTAAAGACCTTATAGAAAACAAGATCAAGCGTTGCAAAACTGATTCATTGCCAGGCTTGGAATTTGACAATCCTGAGAGGCCAGAATGTACCAATCTTCTTTCCATATACCAGCTAATTTCAGGAAAGACAAAAGAGGAAGTTATGCAGGAATGCCAAAACATGAACTGGGGCACATTCAAACCTCTTTTAACGGATGCCTTGATTAATCATTTGCATCCCATTCAGGTTCGCTATGAGGAAATCATGTCTGATTCAGGTTATTTAGATGAAGTTTTGGCAGAAGGTGCTAGAAATGCAGCAGACATAGCAGATGCTACACTTCATAATGTTTATCAAGCAATGGGATTTTTGAGGAGACGTTGA 1233 0.4444 MGGTVVSQFLLLSSCSSPRLFAPSLSCAASTLLHSRLSCPRPRPSIRACTTTASVTSSDTLPPPTPPKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNTYDTLYFIVDLHAITLPYDVQQLSKATRSTAAIYLACGVDPSKASVFVQSHVQAHVELMWLLSSATPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRNLAERINNLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIENKIKRCKTDSLPGLEFDNPERPECTNLLSIYQLISGKTKEEVMQECQNMNWGTFKPLLTDALINHLHPIQVRYEEIMSDSGYLDEVLAEGARNAADIADATLHNVYQAMGFLRRR* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1131 410 Gene3D - 266 376 - -
Dod09g1131 410 Gene3D HUPs 71 405 IPR014729 -
Dod09g1131 410 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 77 86 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Dod09g1131 410 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 58 406 - -
Dod09g1131 410 MobiDBLite consensus disorder prediction 51 70 - -
Dod09g1131 410 CDD TrpRS_core 70 360 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Dod09g1131 410 Hamap Tryptophan--tRNA ligase [trpS]. 68 407 IPR024109 GO:0004830
Dod09g1131 410 PRINTS Tryptophanyl-tRNA synthetase signature 208 229 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Dod09g1131 410 PRINTS Tryptophanyl-tRNA synthetase signature 131 150 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Dod09g1131 410 PRINTS Tryptophanyl-tRNA synthetase signature 273 283 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Dod09g1131 410 PRINTS Tryptophanyl-tRNA synthetase signature 81 97 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Dod09g1131 410 PANTHER BNAA04G15180D PROTEIN 58 406 - -
Dod09g1131 410 SUPERFAMILY Nucleotidylyl transferase 69 406 - -
Dod09g1131 410 TIGRFAM trpS: tryptophan--tRNA ligase 68 406 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Dod09g1131 410 Pfam tRNA synthetases class I (W and Y) 70 361 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1131 K01867 - gmx:100780447 676.011