Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1117 CAGATATGTGCTGTCAAAGCAGGAGGAATGATGTCTCTGGCTATTGACAATCATGGGGTCCTGTGGATGTGGGGAAACTGCCCACAACAAAGCAAAGAAGGCGGCGGGTTATCTCTTGTAAGCAGCTTCAGTCCAACGCCAGTATTGGATTTTCATGGTCACACTGTTGTCAAGGTTGCATGTGGAAATGAGCATGTTGTAGCATTGGTTGGTGCCGGAGAATCATACAAGGGTGAAGATCTAGTGTGCTACTCTTGGGGTTGTAACAGCTATGGCCAGTTAGGGTTGGGGGATAGGGAGAGCAGGCCACATCCAGAAGTTGTGAAAACATTTGATAAGGAGTCCCCTTGGACAATTTATGAGATAGCATGTGGAGCTTTTCACACTGCTTTGCTCACTCGCAAAAAGAAATCTACTGACACGTCAGAAAGCCCGTGCTGGACTTTTGGCCTTGGGGATAATGGCCAGCTTGGGCATGGAACAACTCAAAGCACATTATTTCCTACACCTGTTCAAGACTTGCCACAAAACATGTATCTTGTTAGTGTTGATTGCGGATTGTTTCACACGAGTGTTGTTTCCTCCTCTGGGGATGTATGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTAATGCTAGTCGTGCTGAAACAGATTCAGGTGATGCCCTCTCTCCCTTGCTCGTATCATGCAAGCCACATCAACCTAAATTTCCGGATCCGGTTCAAGTCGCATGTGGGGCTGCACATACCATTATTGTTGCGCAAGATGGATACAAGGTGTGGTCTTGGGGTAGGGGGAGGAGCGGAGTTCTTGGAAATGGCATGGAAATGGATTGTTACACTCCCACCATGGTATTGTGGCCTCCAATAACGGAGGATTTCAAGGAAGAGGAATCAAAGAACTCTGATGAGCAAGACAAGGAAAGAGAAAAGGAGACCAAAGAAACAGACGAGAAATTATCATCAGCATTGAATGAGCTGAAGCTGCTTCAAACAAAGCTATCTACGACGGAAAGATACGCCAGTATACTTCATGGTTGCGTGTTTGGAAAACCTTTTGATGAACAAGATATCCCTGCGTCGTTGAGGGATTCGGGTTCATTCGACATTGCGAAAGAATGGGAGAACATGTTAGAGGGAGCGGATCATAGGACGCTAGTGAGGTTGGAAATGTTCTACCGGGACTTGCTTGCTGGTGTGAAGGATAAACTAATGAAGAGAAGGATCAAGGAAATTGTAAAGGAGTGCCTCCAATCTTCAGAG 1269 0.4649 QICAVKAGGMMSLAIDNHGVLWMWGNCPQQSKEGGGLSLVSSFSPTPVLDFHGHTVVKVACGNEHVVALVGAGESYKGEDLVCYSWGCNSYGQLGLGDRESRPHPEVVKTFDKESPWTIYEIACGAFHTALLTRKKKSTDTSESPCWTFGLGDNGQLGHGTTQSTLFPTPVQDLPQNMYLVSVDCGLFHTSVVSSSGDVWSWGMEKGLGLCPNASRAETDSGDALSPLLVSCKPHQPKFPDPVQVACGAAHTIIVAQDGYKVWSWGRGRSGVLGNGMEMDCYTPTMVLWPPITEDFKEEESKNSDEQDKEREKETKETDEKLSSALNELKLLQTKLSTTERYASILHGCVFGKPFDEQDIPASLRDSGSFDIAKEWENMLEGADHRTLVRLEMFYRDLLAGVKDKLMKRRIKEIVKECLQSSE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1117 423 Pfam Regulator of chromosome condensation (RCC1) repeat 147 192 IPR000408 -
Dod09g1117 423 Pfam Regulator of chromosome condensation (RCC1) repeat 196 254 IPR000408 -
Dod09g1117 423 Pfam Regulator of chromosome condensation (RCC1) repeat 84 132 IPR000408 -
Dod09g1117 423 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 122 132 IPR000408 -
Dod09g1117 423 PRINTS Chromosome condensation regulator RCC1 signature 119 132 IPR000408 -
Dod09g1117 423 PRINTS Chromosome condensation regulator RCC1 signature 262 276 IPR000408 -
Dod09g1117 423 PRINTS Chromosome condensation regulator RCC1 signature 82 98 IPR000408 -
Dod09g1117 423 Gene3D - 1 322 IPR009091 -
Dod09g1117 423 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 81 135 IPR000408 -
Dod09g1117 423 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 423 - -
Dod09g1117 423 SUPERFAMILY RCC1/BLIP-II 2 291 IPR009091 -
Dod09g1117 423 Coils Coil 297 317 - -
Dod09g1117 423 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 197 258 IPR000408 -
Dod09g1117 423 MobiDBLite consensus disorder prediction 294 321 - -
Dod09g1117 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 1 423 - -
Dod09g1117 423 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 19 72 IPR000408 -
Dod09g1117 423 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 144 196 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1117 Dod-Chr9 31854445 31855713 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1117 - - gmx:100815199 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1117 09 31854445 31855713 Dod09g1117 09 31854445 31855713 ECH