Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1101 ATGGATCATCATTTCTATGGCAACACATCTCTTGATCATCATCATCAACATCAACATCATCATAGCTTAATTGACACCGAAAAAACGGATCAACACCACCAATCCCCCAACATTATTCAACACCTTCGTGTCCAAACCCACAGAGACACAGTAATATTAAGTGATCAACGACAAGAAGATAGTACTAATAGTGTCGTTAACAACAATGTTCAGTTTAGCCCTCCAAGGCCTTCAAGTTCCGATGGCACACCATTGTGGGTGGCACCATCAACACCATGTCCAGATTCACCATGGACAATTTCCACCACTCTCCCAAACCCTTCTTCTTCCCCTTCTCTTCTCTACCACTGCATAGCCTCACTCCACCGCCACGAAGGTAACATCTACTCCATCGCGGCTTCCAAGGGCTTGGTCTTCACTGGCTGCAACAGCACAAGAATCCGCGTGTGGAAGCAACCAGATTGCATGGACAAAGGGTACCTTAAAGCAAGCTCTGGGGAGGTAAGGGCCGTTTTAGCTCACAGCAACACGCTCTTCTCAACACATAAGGACCACAAAATAAGGATATGGAACTTCACTGTCTCCGAAAACTTCAAGTCCAAGAAAATAGGTACCCTCCCTAGGAAAACCTCGTTTCTCATGTTCCCAACAAGAGGGAATAATAACAACCACCACACGCAAAAACACAAGGACTCGGTTTCTTGCATGGCTTATTACCATTCAGAAGGGCTATTATACACTGGCTCTCATGATAAAACAGTGAAGGCTTGGAGGGTCTCGGATAGAAGATGCGTTGACTCATTCGTGGCACATGAAGATTACATAAACTCCATGTTGGTGAACCAAGACGATGGTTCCCTTTTCACTTCGTCTTCAGATGGGACAGTGAAGATATGGAGAAGGGTTTACACCGAAGACTCTCACACCCTCACAATGACACTCAAATTCCAACCTTCACCAGTGAATGCACTAGCAATAAGCTCCTCGTTCAACGATTGTTTCCTCTATTCAGGTTCTTCGGATGGAATGATAAATTTCTGGGAGAAGGAGAGGCTGTGCTACAGGTTCAACCATGGAGGGTTCTTGCAGGGTCACCGTTTTGCGGTTCTTTGTTTGGCCACAGTTGGGAGCTTGGTGTTCAGCGGGTCGGAAGACACGACGATAAGGGTGTGGAGGAGGGAGGAAGGGAGCTGCTACCACGAGTGTTTGGCGGTTCTTGATGGGCATAGAGGGCCTGTGAGATGCTTGGCTGCGTGCCTTGAGATGGAGAAAGTGGTGATGGGGTTCTTGGTGTATAGTGCTAGCTTGGACCAGACGTTTAAGGTTTGGAGGATTAAGGTTGCGCCTGATGAATATGGGAGTGATCAGAGGGAATTAGGACGAGGGAAGGTTATTAGGGAGTATGATATGAGCCCCGTTTTGTCGCCTTCTTGGGTCGAGAAGAAGCTACAAGGTAGCTACTTTCAGTGA 1470 0.4707 MDHHFYGNTSLDHHHQHQHHHSLIDTEKTDQHHQSPNIIQHLRVQTHRDTVILSDQRQEDSTNSVVNNNVQFSPPRPSSSDGTPLWVAPSTPCPDSPWTISTTLPNPSSSPSLLYHCIASLHRHEGNIYSIAASKGLVFTGCNSTRIRVWKQPDCMDKGYLKASSGEVRAVLAHSNTLFSTHKDHKIRIWNFTVSENFKSKKIGTLPRKTSFLMFPTRGNNNNHHTQKHKDSVSCMAYYHSEGLLYTGSHDKTVKAWRVSDRRCVDSFVAHEDYINSMLVNQDDGSLFTSSSDGTVKIWRRVYTEDSHTLTMTLKFQPSPVNALAISSSFNDCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLATVGSLVFSGSEDTTIRVWRREEGSCYHECLAVLDGHRGPVRCLAACLEMEKVVMGFLVYSASLDQTFKVWRIKVAPDEYGSDQRELGRGKVIREYDMSPVLSPSWVEKKLQGSYFQ* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1101 489 SMART WD40_4 261 300 IPR001680 GO:0005515
Dod09g1101 489 SMART WD40_4 355 392 IPR001680 GO:0005515
Dod09g1101 489 SMART WD40_4 114 151 IPR001680 GO:0005515
Dod09g1101 489 SMART WD40_4 220 258 IPR001680 GO:0005515
Dod09g1101 489 SMART WD40_4 399 444 IPR001680 GO:0005515
Dod09g1101 489 SMART WD40_4 307 348 IPR001680 GO:0005515
Dod09g1101 489 SMART WD40_4 154 191 IPR001680 GO:0005515
Dod09g1101 489 Gene3D - 200 459 IPR015943 GO:0005515
Dod09g1101 489 Pfam WD domain, G-beta repeat 361 391 IPR001680 GO:0005515
Dod09g1101 489 Pfam WD domain, G-beta repeat 401 443 IPR001680 GO:0005515
Dod09g1101 489 Pfam WD domain, G-beta repeat 263 299 IPR001680 GO:0005515
Dod09g1101 489 Pfam WD domain, G-beta repeat 312 347 IPR001680 GO:0005515
Dod09g1101 489 Pfam WD domain, G-beta repeat 222 257 IPR001680 GO:0005515
Dod09g1101 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Dod09g1101 489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 299 - -
Dod09g1101 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 401 IPR001680 GO:0005515
Dod09g1101 489 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Dod09g1101 489 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Dod09g1101 489 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Dod09g1101 489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 260 - -
Dod09g1101 489 PANTHER OS01G0232200 PROTEIN 15 482 - -
Dod09g1101 489 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 15 482 IPR045182 -
Dod09g1101 489 CDD WD40 117 444 - -
Dod09g1101 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 299 IPR001680 GO:0005515
Dod09g1101 489 SUPERFAMILY WD40 repeat-like 116 445 IPR036322 GO:0005515
Dod09g1101 489 Gene3D - 11 199 IPR015943 GO:0005515
Dod09g1101 489 MobiDBLite consensus disorder prediction 55 87 - -
Dod09g1101 489 MobiDBLite consensus disorder prediction 1 34 - -
Dod09g1101 489 MobiDBLite consensus disorder prediction 56 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1101 Dod-Chr9 31690665 31692134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1101 229 446 Miscellaneous Gene Families AT5G08390 24.444 1.03e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1101 - - adu:107470716 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1101 09 31690665 31692134 Dod09g1101 09 31690665 31692134 ECH