Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1077 ATGGCTACGCCGTCGTTGGACGAAGAAACAACCAAGAAAGTCATAAGACAAGTCGAGTTCTACTTCAGCGACAGCAACCTTCCCACCGACAATTTCATGCGTAAAACCGTCTCCGAAAGCGAAGATGGCATGGTTAGTTTGGCTTTGATTTGTTCATTCAATAGGATGAGAAGGCACCTTAAGCTTGCTGATTTGAAGCCCGATGGGGTTTCCCAAGACACTGTTGCTGCTGTTGCTCAGGCCCTGAGGAATTCGGCATCGCTCAAGGTCTCTGAAGATGGTCAAAAAGTAGGCAGGACAACTGAACTTCCAAAGCCAGAAGAGGTAATTGAACAGGTGGAGATAAGAACAATTGCTGCATCCCCATTTGAGTATGACTTGAAGCTTGAAGATGTGGAGGCATTCTTTGGTCAATATGCCAAGGTTAATAGTGTCCGGCTGCCTCGGCATGTTGGAGACAAAAGGTTCTTCTGTGGCACTGCCCTTATTGAGTTCTCATCAGAGGAAGAAGTAGAAAAAATTTTGAAGCTAAAACTGGTGTATGCTGGGGCTGAGTTAGAATTAAAACCAAAGAAAGACTTTGATGCAGAGAGAGAAATAGAATTAGCTGATTATGAAAAATCTCGTCCTACTATGGGTGCACATCACCAGAATAATAACTCAAATGAAGAAGACAGCTACCCTAAAGGCTTAATTATTGCCTTCAAACTGAAGAGCACTTCAGATGAAGTTCCGTCCAAAGAAAATGGTGCTGATCAACATACCAATGGCAATGGTGATGTCTCCAATACTGATGAGAAACCCCCCCCTGAAGTTGCTTCTGGGGAAAGTGATGAAAAGGTACCAGCAAATGTTGACAATGATAAAGAAAACAATGAGACGAAAGAAGGAAAGGAAACTGGGAGTGACAAGAAGGGTCAAGAAGCTGATGAAAAATTTTCGGCTGCTGCTTACAAGAACAACATGAATGTTGTCTTGCGTGAGGATTTGAAGGGTGTCTTTGAGAAGTTTGGTACAGTGAAGTACATTGATTTCAAGATTGGAGCAGAGTCAGGATACATCCGGTTTGAAGAAGCTGAAGCTGCTCAAAAAGCTCGTGCTGCTGCAGTACTCTCTGAAAAGGGTGGCTTGGTTGTGAAAAATTTTATTGCTACTCTAGATCCAGTGACTGGTGAGGCTGAAAGAGAATACTGGAGCCTTCTCCGTGGTAATCAGGACAAGCACCACCGAGGATTTAAGAATAACCGAGGAAGGGGAGGAAGGCATGGTAGAGGGGGAAAACATGCACGCTCTAGAGATAATGGATCTGCAGGAGATCGTCCAAATAAAGCTCAGAAAGTTTGA 1344 0.4382 MATPSLDEETTKKVIRQVEFYFSDSNLPTDNFMRKTVSESEDGMVSLALICSFNRMRRHLKLADLKPDGVSQDTVAAVAQALRNSASLKVSEDGQKVGRTTELPKPEEVIEQVEIRTIAASPFEYDLKLEDVEAFFGQYAKVNSVRLPRHVGDKRFFCGTALIEFSSEEEVEKILKLKLVYAGAELELKPKKDFDAEREIELADYEKSRPTMGAHHQNNNSNEEDSYPKGLIIAFKLKSTSDEVPSKENGADQHTNGNGDVSNTDEKPPPEVASGESDEKVPANVDNDKENNETKEGKETGSDKKGQEADEKFSAAAYKNNMNVVLREDLKGVFEKFGTVKYIDFKIGAESGYIRFEEAEAAQKARAAAVLSEKGGLVVKNFIATLDPVTGEAEREYWSLLRGNQDKHHRGFKNNRGRGGRHGRGGKHARSRDNGSAGDRPNKAQKV* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1077 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 176 IPR000504 GO:0003723
Dod09g1077 447 Gene3D - 2 104 IPR036388 -
Dod09g1077 447 MobiDBLite consensus disorder prediction 429 447 - -
Dod09g1077 447 Gene3D - 106 199 IPR012677 -
Dod09g1077 447 CDD LA_like_plant 10 99 - -
Dod09g1077 447 PANTHER BNAANNG34180D PROTEIN 2 447 - -
Dod09g1077 447 MobiDBLite consensus disorder prediction 411 428 - -
Dod09g1077 447 Pfam RNA binding motif 325 419 IPR014886 GO:0003723
Dod09g1077 447 Gene3D - 312 417 IPR012677 -
Dod09g1077 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 207 IPR000504 GO:0003723
Dod09g1077 447 MobiDBLite consensus disorder prediction 406 447 - -
Dod09g1077 447 SUPERFAMILY RNA-binding domain, RBD 327 404 IPR035979 GO:0003676
Dod09g1077 447 ProSiteProfiles xRRM domain profile. 304 430 IPR014886 GO:0003723
Dod09g1077 447 MobiDBLite consensus disorder prediction 281 309 - -
Dod09g1077 447 PANTHER LUPUS LA PROTEIN-RELATED 2 447 IPR045180 -
Dod09g1077 447 SUPERFAMILY RNA-binding domain, RBD 108 177 IPR035979 GO:0003676
Dod09g1077 447 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Dod09g1077 447 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Dod09g1077 447 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Dod09g1077 447 MobiDBLite consensus disorder prediction 205 227 - -
Dod09g1077 447 MobiDBLite consensus disorder prediction 212 226 - -
Dod09g1077 447 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Dod09g1077 447 SMART la 8 100 IPR006630 -
Dod09g1077 447 SMART rrm1_1 117 189 IPR000504 GO:0003723
Dod09g1077 447 SMART rrm1_1 316 380 IPR000504 GO:0003723
Dod09g1077 447 MobiDBLite consensus disorder prediction 242 309 - -
Dod09g1077 447 Pfam La domain 14 84 IPR006630 -
Dod09g1077 447 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Dod09g1077 447 CDD RRM1_La 117 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1077 Dod-Chr9 31438149 31442027 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1077 K11090 - gmx:100786016 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1077 09 31438149 31442027 Dod09g1077 09 31438149 31442027 ECH