Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1053 ATGTGTTGTTACCTATTCACTGAGGTCTTGAAGAAGTGTTCAAGGAACCGTTTGATTGATCAGGGAAAGCAGCTACACGGGTTTGTGGAGAAACTAGGGTTAGGGTTTGATTTGATTTTGAACAATGATCTCATTGATATGTACGCGAAATGTGGCACTTTGGATTTGGCTTGTTCGGTGTTTGATAGAATGCCCCAAAGAAATGTGGTGTCTTGGACGGCTCTGATGTGTGGTTACCTGCAAAATGGGGATGCCAAATCCACTTTGGTGTTGTTCTCTAAAATGGGTCGTTCGTGTGTTAAGCCTAATGAGTTCACACTTTCTACTGGCCTAAAAGCTTCAGGGGTTTTGGGTGTCCCTGAGAATGGGATGCAGATTCATGGGGTTTGTGCAAAATCCAATTTTGAGTGGGTGCCCGTTGTGGGAAATTCCATCATTGATATGTACTCCAAGTGTGGTCAGGTTGGCGAGGCGGCTCGGATGTTTGATGTGATGCCGGTGAGGAATGTTGTGAGTTGGAATGCGATGATTGCAGGGTACACTCATGAAAGAAATGGTGAAGAGGCTTTGAATCTGTTTGGGAGAATGCAAGAGAAGGGGAAGGTTCCTGATGAATATACATATTCAAGTACTTTGAAGGCATGTAGTTCTATTGGTGCAGTAGGTGAAGGATCACAAATACATGCTGCATTGATCAGACAAGGATTTCCATACTTGACTCAATCAACTGTTGCCTGTGCTCTTGTTGATTTTTATGTCAAATGTAGGCGCATGAATGAAGCTAGGAAGGTGTTTGAGCAAATTGAACAGAAGAATGTGGTATCTTGGAGCGCGCTTATTCTTGGTTATGCTCAAGAAGACAACTTGGCAGAAGCCATGAACTTGTTTCAGCAGTTGAGAGAGAGCAAACATAAGATTGATGGTTTTGTTCTCTCGAGTCTCATAGGTGTATTTGCTGATTTTGCCCTTGTAGAGCAGGGGAAGCAAATGCATGCTTATGCCATCAAAGTCCCATACAGTTTAGAAACATCAGTGGCTAATTCAGCATTGGATATGTACATGAAATGCGGATTAACAGATGAGGCGGATGCACTTTTCAGAGAGATGCCAACGAGAAACGTGGTTTCCTGGACAGTTATGATCACTGGTTATGGAAAACACGGTATTGGCAATAAGGCTGTAAAACTTTTCAATGAAATGCAAGTTCATGGAATCGAGCCTGACAGAGTGACGTACTTAGCAGTGCTCTCAGCTTGCAGCCATTCTGGACTCATCAAAGAAGGTCAACAATACTTCTCCAGTTTCTGCAGCAATCAGCATAGCAAACCACAAGTGGAGCATTACGCTTGCATGGTCGATCTCCTCGGGCGTGCAGGACGCTTGAAGGAAGCTAAGAATCTCATCGAGAAAATGCCCTTGAAGCCAAATGTGGGTATATGGCAGACATTACTAAGTGCTTGTAGAATGCATGGGGACGTGGATACGGGGGAACAAGTGGGAGAGATACTATTGGGATTGGATGGTAATAATCCAGTCAACTATGTCATGTTATCAAACATCTATGCTGATGCAGGATATTGGAATGAGAGCGAGAAGATAAGAGAGAAAGTGAAGAAGAAGGGATTGAAGAAAGAGGCCGGGCGTAGTTGGGTAGAGATAGACAAGGAAATCCACATTTTCTACAATGGGGATGGCACACATCCACTCATAGAGAAAATTCATGAAGTGTTGAAGGAAATGGAGAAGAGGATGAAAGAAGAGACAGGGTATGTTCACAACCTGAACTTCGCATTGCATGATGTTGAAGAGGAGTCAAAGGTGGAGAGCTTGAGGTATCATAGCGAGAAGTTGGCTATTGGGTTGGTTTTGGTTCGTGGTGAGGGGAAAGGAGAGAGGATGATTAGGATTTTCAAAAACTTGAGGGTGTGTGGTGATTGCCATACATTCATTAAGGGTCTGTCAAAGGTTCTGAAGATTGTATTTGTGGTGAGAGATGCAAACAGGTTTCACAGATTTGAGAACGGCTTGTGTTCTTGTGAAGATTACTGGTGA 2052 0.4347 MCCYLFTEVLKKCSRNRLIDQGKQLHGFVEKLGLGFDLILNNDLIDMYAKCGTLDLACSVFDRMPQRNVVSWTALMCGYLQNGDAKSTLVLFSKMGRSCVKPNEFTLSTGLKASGVLGVPENGMQIHGVCAKSNFEWVPVVGNSIIDMYSKCGQVGEAARMFDVMPVRNVVSWNAMIAGYTHERNGEEALNLFGRMQEKGKVPDEYTYSSTLKACSSIGAVGEGSQIHAALIRQGFPYLTQSTVACALVDFYVKCRRMNEARKVFEQIEQKNVVSWSALILGYAQEDNLAEAMNLFQQLRESKHKIDGFVLSSLIGVFADFALVEQGKQMHAYAIKVPYSLETSVANSALDMYMKCGLTDEADALFREMPTRNVVSWTVMITGYGKHGIGNKAVKLFNEMQVHGIEPDRVTYLAVLSACSHSGLIKEGQQYFSSFCSNQHSKPQVEHYACMVDLLGRAGRLKEAKNLIEKMPLKPNVGIWQTLLSACRMHGDVDTGEQVGEILLGLDGNNPVNYVMLSNIYADAGYWNESEKIREKVKKKGLKKEAGRSWVEIDKEIHIFYNGDGTHPLIEKIHEVLKEMEKRMKEETGYVHNLNFALHDVEEESKVESLRYHSEKLAIGLVLVRGEGKGERMIRIFKNLRVCGDCHTFIKGLSKVLKIVFVVRDANRFHRFENGLCSCEDYW* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1053 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Dod09g1053 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Dod09g1053 683 Pfam PPR repeat 247 273 IPR002885 -
Dod09g1053 683 Pfam PPR repeat 274 302 IPR002885 -
Dod09g1053 683 Pfam PPR repeat 448 472 IPR002885 -
Dod09g1053 683 Gene3D Tetratricopeptide repeat domain 3 116 IPR011990 GO:0005515
Dod09g1053 683 Gene3D Tetratricopeptide repeat domain 124 232 IPR011990 GO:0005515
Dod09g1053 683 Gene3D Tetratricopeptide repeat domain 233 337 IPR011990 GO:0005515
Dod09g1053 683 PANTHER - 7 641 - -
Dod09g1053 683 Pfam E motif 490 552 IPR046848 -
Dod09g1053 683 Pfam PPR repeat family 372 420 IPR002885 -
Dod09g1053 683 Pfam PPR repeat family 168 216 IPR002885 -
Dod09g1053 683 Pfam PPR repeat family 67 112 IPR002885 -
Dod09g1053 683 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 7 641 - -
Dod09g1053 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Dod09g1053 683 Pfam DYW family of nucleic acid deaminases 589 683 IPR032867 GO:0008270
Dod09g1053 683 Gene3D Tetratricopeptide repeat domain 343 592 IPR011990 GO:0005515
Dod09g1053 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Dod09g1053 683 TIGRFAM PPR: pentatricopeptide repeat domain 375 408 IPR002885 -
Dod09g1053 683 TIGRFAM PPR: pentatricopeptide repeat domain 171 205 IPR002885 -
Dod09g1053 683 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Dod09g1053 683 TIGRFAM PPR: pentatricopeptide repeat domain 70 104 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1053 Dod-Chr9 31002375 31004426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1053 4 683 Glycoside Hydrolase AT3G49170 38.384 1.52e-164 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1053 - - gmx:100806657 1124