Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1052 ATGGGAACGAGAACCGCGCAATTTCTCGTACGAGAACTCGAGAACCGTTTCGTCCCGGCGCTGATAAACTGCGCGAGAATATCAGAACTGAAGAGAATCCACGCACAAATCGTTAAGCTCTCACTATCACAGAGCAACTTTCTGGTCACAAAAATGTTGGATTCGTGCGAAAAATTCGGGGATTTAGGTTACGCCACGTTGCTCTTCGAGCAACTCGTGGAGCCAAATGTGTTTTCTTATAACGCTATGATCAGAACCTTCACGCGAAATCATCAACACGACCTAGCAATCACGCTGTTCACGCGAATGCTTAGAGACGAAAGAAAATCTGATAAAGCTCCGATTATGCCCAATGAATTCACGTTCCCGTTTGTGATAAGGTCGTGTTCGGTGCTCCAGTGGAACCGTCTTGGTGACCAGCTTCATGGGCATGTCTGGAAATTTGGGTTGAAATCAAATTCTGTAACGGAGAATGCACTGATTGACATGTACACGAAATTTGGTGAACTGGGTAATGCACACAAGGTGTTTGAGGGAATGTGTGCGCCAGATGTTGTTTCTTGGAATGGCTTAATATTTGGGCATGCTAGGTTGGGGAATATGGAGAGTGCAAGGAAGCTGTTTGATGAAATGCCTTGTAGGACAATTGTGTCTTGGACAACCATGATAACGGGGTACTGTGGAATAGGTTGTTATGGTGATGCACTGGACATTTTCAGGAGGATGCAAATGGTGGGTATTGAGCCCGATGAGATTAGTGTCATGGCTGTTTTGCCTGCTTGTGCACAGCTTGGTGCTCTTGAGGTTGGCAAGTGGATTCACATGTACTCGGATAAGAAAGGGTTTTTGCAGAAGACTTGTGTGTGCAATGCACTGGTTGAGATGTATGCTAAGTGTGGTTGTATTGATGAAGCTCAGGGGTTGTTTGATGAGTTGGTTGAGAAGGATGTGATTTCTTGGAGTACTATGATTGGAGGATTGGCCAATCATGGGAAAGCTCATGCAGCAATTGAGCTGTTTCAAGATATGCAGAAGGCAAAAGTCACTCCTAATGCAATAACTTTTGTTGGGGTTCTGTCGGCTTGTGCTCATGCAGGTTTATGGAATGAGGGGTTGAAGTATTTTGATGTCATGAGGGGGGATTATCATATAGCTCCAGCGATTGAGCACTATGGTTGTTTAGTTGATCTTCTAGGACGTTCTAGTCAGCTTGAACAGGCTCTCAACACAATATTGAAGATGCCAATGAAGCCAGATTCAAGGATATGGAACTCTTTGTTGAGTTCTTGCAGGATTCATCACAATCTTGAGATTGCTGTTGTCGCTATGGAACAGCTTTCAGAGCTTGAGCCACAGGAATCTGGGAACTATGTTTTGCTTGCTAACATATATGCAGAACTTGGCAAGTGGGAAGGTGTATCAAATATTAGGAAACTCATAAGAAGCAAGGGGATAAAGAAAACCCCCGGTTGTAGCTCGATTGAGGTTAACAATGTGGTTCAAGAATTTGTATCAGGTGACGATACAAAACCCTATTCACAAGATGTCTTTTGGATCCTACAAATGCTGGTTTTACACCAAGCTAGAATTCATGACTTGATTGAAGTTGAAGCTGAAGATGCAAGTCAATTTCATTATGAAATTTAA 1647 0.4335 MGTRTAQFLVRELENRFVPALINCARISELKRIHAQIVKLSLSQSNFLVTKMLDSCEKFGDLGYATLLFEQLVEPNVFSYNAMIRTFTRNHQHDLAITLFTRMLRDERKSDKAPIMPNEFTFPFVIRSCSVLQWNRLGDQLHGHVWKFGLKSNSVTENALIDMYTKFGELGNAHKVFEGMCAPDVVSWNGLIFGHARLGNMESARKLFDEMPCRTIVSWTTMITGYCGIGCYGDALDIFRRMQMVGIEPDEISVMAVLPACAQLGALEVGKWIHMYSDKKGFLQKTCVCNALVEMYAKCGCIDEAQGLFDELVEKDVISWSTMIGGLANHGKAHAAIELFQDMQKAKVTPNAITFVGVLSACAHAGLWNEGLKYFDVMRGDYHIAPAIEHYGCLVDLLGRSSQLEQALNTILKMPMKPDSRIWNSLLSSCRIHHNLEIAVVAMEQLSELEPQESGNYVLLANIYAELGKWEGVSNIRKLIRSKGIKKTPGCSSIEVNNVVQEFVSGDDTKPYSQDVFWILQMLVLHQARIHDLIEVEAEDASQFHYEI* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1052 548 SUPERFAMILY TPR-like 87 473 IPR011990 GO:0005515
Dod09g1052 548 Pfam PPR repeat 180 211 IPR002885 -
Dod09g1052 548 Gene3D Tetratricopeptide repeat domain 293 514 IPR011990 GO:0005515
Dod09g1052 548 Gene3D Tetratricopeptide repeat domain 2 140 IPR011990 GO:0005515
Dod09g1052 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Dod09g1052 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 315 IPR002885 -
Dod09g1052 548 PANTHER OS05G0439300 PROTEIN 10 536 - -
Dod09g1052 548 Pfam PPR repeat family 215 262 IPR002885 -
Dod09g1052 548 Pfam PPR repeat family 315 363 IPR002885 -
Dod09g1052 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Dod09g1052 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 110 IPR002885 -
Dod09g1052 548 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 10 536 - -
Dod09g1052 548 Pfam PPR repeat 78 106 IPR002885 -
Dod09g1052 548 Pfam E motif 433 495 IPR046848 -
Dod09g1052 548 TIGRFAM PPR: pentatricopeptide repeat domain 78 106 IPR002885 -
Dod09g1052 548 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Dod09g1052 548 TIGRFAM PPR: pentatricopeptide repeat domain 318 352 IPR002885 -
Dod09g1052 548 TIGRFAM PPR: pentatricopeptide repeat domain 186 212 IPR002885 -
Dod09g1052 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 214 IPR002885 -
Dod09g1052 548 Gene3D Tetratricopeptide repeat domain 141 271 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1052 Dod-Chr9 31000721 31002367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1052 24 529 Glycoside Hydrolase AT3G49170 32.094 5.17e-88 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1052 - - cam:101511241 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1052 09 31000721 31002367 Dod09g1052 09 31000721 31002367 ECH