Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0867 ATGGGTACCCTCACCCTTACCCTTTCTCTTTCCCTTCTCAAGTGCCACAGATTACCCTTCCTCTCTACGGTTCCCTACTCTGCTCGACCCCTTCTCTCCGGTTCCCACATCTTCCGCACCACCACCAACAACAACTACAACTTCCCTTCGTTCTGCCTCTGCAGCTCTCTGGGGCCATCTCAGCCGTTAACGGAGGACAAGAAGAATCTCTGCGAATCGGACGGCCATGATCACAAGGGTCCATTGCCGGAGTGCTGGCTGCACAACACACTCAGCAGAAAGAAGGAGCTTCTCAAACCCAAATTCGAATCGAAGGTGAAAATGTACGTTTGCGGTGTCACCGCTTATGATCTCAGCCATATTGGCCACGCTCGCGTCTACATCAATTTCGACATTCTTTACAGATATCTTAGGCATTTGGGATATGAAGTCTGTTACGTTCGCAATTTTACTGATTTAGATGACAAGATCATTACTAGAGCAAACAAGTTAGGAGAAGATCCACTCAGTTTGAGCCGGCGCTATAGTGAGGTCTTCCGTCAAGAAATGATGGCTCTTAATTGTCTGCCTCCTTCGGTGGAACCAAAAGTCTCAGAGCACATTCCCCAAATCATTGATATGATTGAGAAGATTCTGAATAATGGCTATGCCTACGTTCTTGATGGGGATGTATACTTTATTATAGACAAAATTCCAGACTATGGAAAATTATCTGATCGAGATCCAGAAGATAATAGACCTGGTGAGAGGGTTGTTGTTGATCCAAGGAAGATAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCCAGGAGAGCCATTTTGGGAGAGCCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCTATGAGTGCAACTTATCTTGGTTACTCTTTTGACATCCATGGTGGAGGGGATGACCTTAAGTTTCCCCACCATGAAAATGAAAGAGCTCAGAATTGTGCTGCATGCAATGAAAGTGATATAAGCCTATGGATACATAATGGCCTTCTCACTGTAAACAATCAGAAGATGTCTAAATCTATGGGAAACTTTGTCACAATACAGCAGGTATTAGAAGATTACCATTACCATCCTCTGGCTTTGAGATACTTTATGATGGGTGCCCATTATCGATCTGCAATTGACTACTCTCTTTCTAAGATACAGCTTGAAGTCGCTTCAGACCGTCTTTTCTATATTTATGAGACATTGCATGAATGTGAAAGCTTTCTGAATCAGCATGATCATACCATTGGGAAGAACTCCATCCCAGCAGAAACTATGAGCATTATTGATAACTTCCATAATGTTTTTAGGACCTCAATGTCTGATGATCTTCATACTCCAGTTGTTTTGTCTGGACTATCTGACCCATTGAAATCAATCAATGATTTGCTGCATACTCGTCAGGGGAAAAAACAGAAATCTCGTGTAGAATCACTTGCTGCTTTGGAGAAGGGCATCAGGAATGTCCTGACTGTCTTAGGACTTTTGCCTACACATTATTCTGAGATTTTACAGCAGCTTAGGGAAAAAGCTTTGAAACGTGCAAACTTGACAGAAGCTGAAGTCTTACAGAAAATTGAAGAACGGGCTGCTGCTAGAATTGAAAAGGAGTATGCTAAATCTGACGCAATAAGAAAGGATTTGGCTGTTGTTGGTATTAATCTTATGGACAGTCCGAACGGCACAACTTGGAGGCCAGCCATTCCCCTTGGGCTACAAGAGCAACACATCAATGCACCTTGA 1764 0.4354 MGTLTLTLSLSLLKCHRLPFLSTVPYSARPLLSGSHIFRTTTNNNYNFPSFCLCSSLGPSQPLTEDKKNLCESDGHDHKGPLPECWLHNTLSRKKELLKPKFESKVKMYVCGVTAYDLSHIGHARVYINFDILYRYLRHLGYEVCYVRNFTDLDDKIITRANKLGEDPLSLSRRYSEVFRQEMMALNCLPPSVEPKVSEHIPQIIDMIEKILNNGYAYVLDGDVYFIIDKIPDYGKLSDRDPEDNRPGERVVVDPRKINPADFALWKSAKPGEPFWESPWGPGRPGWHIECSAMSATYLGYSFDIHGGGDDLKFPHHENERAQNCAACNESDISLWIHNGLLTVNNQKMSKSMGNFVTIQQVLEDYHYHPLALRYFMMGAHYRSAIDYSLSKIQLEVASDRLFYIYETLHECESFLNQHDHTIGKNSIPAETMSIIDNFHNVFRTSMSDDLHTPVVLSGLSDPLKSINDLLHTRQGKKQKSRVESLAALEKGIRNVLTVLGLLPTHYSEILQQLREKALKRANLTEAEVLQKIEERAAARIEKEYAKSDAIRKDLAVVGINLMDSPNGTTWRPAIPLGLQEQHINAP* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0867 587 SMART dalr_2_4 442 511 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Dod09g0867 587 TIGRFAM cysS: cysteine--tRNA ligase 87 572 IPR015803 GO:0004817|GO:0005524|GO:0006423
Dod09g0867 587 CDD CysRS_core 86 389 IPR032678 -
Dod09g0867 587 Pfam tRNA synthetases class I (C) catalytic domain 101 394 IPR032678 -
Dod09g0867 587 Gene3D - 392 573 - -
Dod09g0867 587 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 84 582 - -
Dod09g0867 587 PANTHER CYSTEINYL-TRNA SYNTHETASE 84 582 IPR024909 -
Dod09g0867 587 Pfam DALR domain 443 504 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Dod09g0867 587 Gene3D HUPs 68 389 IPR014729 -
Dod09g0867 587 PRINTS Cysteinyl-tRNA synthetase signature 273 291 IPR024909 -
Dod09g0867 587 PRINTS Cysteinyl-tRNA synthetase signature 144 153 IPR024909 -
Dod09g0867 587 PRINTS Cysteinyl-tRNA synthetase signature 108 119 IPR024909 -
Dod09g0867 587 PRINTS Cysteinyl-tRNA synthetase signature 304 325 IPR024909 -
Dod09g0867 587 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 427 572 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Dod09g0867 587 Hamap Cysteine--tRNA ligase [cysS]. 85 574 IPR015803 GO:0004817|GO:0005524|GO:0006423
Dod09g0867 587 SUPERFAMILY Nucleotidylyl transferase 86 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0867 Dod-Chr9 28254762 28260388 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0867 K01883 - gmx:100786700 844.728