Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0550 ATGCGGGTTTGTGGAATGGCCTTATTGGTTTTCGAAGGCATTGCTTTCAAAAACGCCGGAGCGTGGAATGCAATGATTTCAGGTGTTGCATTGAATGGTGATGCGAGGATGTCTCTTGAGTTGTTTCACCGAATGGTTGCTAGTGGATCCGAGCCGAATGAGACCACCTTCGTGAATGGTGATGCGAGGATGTCTCTTGAGTTGTTTCACCGAATGGTTGCTAGTGGATCCGAGCCGAATGAGACCACCTTCGTGGCTGTCCTCACTGCTTGTACACATGCTAAGATGGTGCAGGAAGGCCTTCGATTGTTCGATAAGATGAGCAGTGTTTATGGTGTTGCGCCACGGTTGGAGCATTGTGCTTGCGTGATTGACCTTTTGTCAAGAGCTGGCATGGTGGAGGAGGCTGAGAAATTCATGGAGGAGAAGATGGGTGGACTTGCGGCCGGTGATGCTAATGTTTGGGGTGCGCTTCTAAATGCGTGTAGAATTTGTAAGAATCTTGAGGTTGGAAATAGAGTGTGGAATAAACTGCTTGATATGGGCGTAAATGACTGTGGTACTCATGTTCTTACGTACAATATATACAGAGAAGTTGGGTGCGATGCGGAAGCAAACAGAGTTAGAGGTAGGATTTCCGAAGCAGGGATGCAGAAGAAACCTGGTTGCAGCATAATAGAGGTCAGTAATGAAGTTGAAGAGTTTCTTGCAGGTGATCACTCTCATCCGCAAGCACAAGAAATCTGCAAATTGCTTGATTCTATGCTCAGGATGGTGAATTTAGAAACCTTCTGA 795 0.4654 MRVCGMALLVFEGIAFKNAGAWNAMISGVALNGDARMSLELFHRMVASGSEPNETTFVNGDARMSLELFHRMVASGSEPNETTFVAVLTACTHAKMVQEGLRLFDKMSSVYGVAPRLEHCACVIDLLSRAGMVEEAEKFMEEKMGGLAAGDANVWGALLNACRICKNLEVGNRVWNKLLDMGVNDCGTHVLTYNIYREVGCDAEANRVRGRISEAGMQKKPGCSIIEVSNEVEEFLAGDHSHPQAQEICKLLDSMLRMVNLETF* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0550 264 Pfam E+ motif 233 256 IPR046849 -
Dod09g0550 264 Gene3D Tetratricopeptide repeat domain 5 58 IPR011990 GO:0005515
Dod09g0550 264 Gene3D Tetratricopeptide repeat domain 59 261 IPR011990 GO:0005515
Dod09g0550 264 TIGRFAM PPR: pentatricopeptide repeat domain 22 54 IPR002885 -
Dod09g0550 264 TIGRFAM PPR: pentatricopeptide repeat domain 83 109 IPR002885 -
Dod09g0550 264 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 18 52 IPR002885 -
Dod09g0550 264 Pfam PPR repeat 21 49 IPR002885 -
Dod09g0550 264 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 58 237 - -
Dod09g0550 264 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 58 - -
Dod09g0550 264 Pfam E motif 167 227 IPR046848 -
Dod09g0550 264 Pfam Pentacotripeptide-repeat region of PRORP 63 144 IPR033443 -
Dod09g0550 264 PANTHER - 58 237 - -
Dod09g0550 264 PANTHER - 6 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0550 Dod-Chr9 8714887 8715681 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0550 10 256 Glycoside Hydrolase AT3G49170 32.794 3.70e-40 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0550 - - vra:106757045 362.073