Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0499 ATGGATAACCGTAACTGGGATCAGACTCTGCAAGATGGAAAACTCTACAGGCACCTCAATTCCCTTATTGCTGCAAGTGCTGTTGCTTCAGCAACTATGACACCACTGAATGTGGAAGCCCCACCAAACAAGCTTCTTGAGCTGGTTGCTAAGGGTCTTGCAGTGGAGAAAGATGACATGTTGAAAGGGACTGCGTCGTCTCCTTTTCGCGATTCGGGGGCAACGCCATCTCATCTGGGCGCTGCCGCTGCCCCCTTTTTTTATTACAGTGCTGTGCCAGATGTAAAAGGTTCGTCGAAGAGCTTTCCAAAGCATGAGACACGACACCTTTCAGAGCACAAGAATGTTGCCAGATGTGCAAGATTTAGTCCTGATGGAAGGTTTGTTGCCACCGGTAGTGCAGATACATCAATAAAGCTATTTGAGGTTTCAAAGATCAAGCAAATGTTACTTCCAGATACAAAAGATGGACCTGTCAGGCCTGTCATACGAACATTTTATGACCACATACAACCAATAAATGATCTGGATTTTCATCCACAAGGTATCATCCTGATTTCTGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCTAAAACCAATGCAAAGAGAGCATACAGGGTTATCCAGGACACGCACAATGTTCGCTCTGTTTCTTTTCATCCGTCTGGAGACTTTGTGCTGGCAGGAACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTTCAGTGTTATCTATCGGCAAACATCCCAGAGGTTGGCCCAAATGGAGCCATAAACCAGGTCAGATATTCTTGTACGGGTGCCATGTATGTTACAGCATCTAAAGATGGTGCTATTAGGTTGTGGGATGGCATCACTGCCAATTGTGTGCGCTCAATAACTGGAGCGCATGGAACAGCTGAGGCTACCAGTGCGATTTTTACAAAGGATCAACGGTTTGTGCTCTCCTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTCTGCTCTGGAAGATTAGTCAAACAATATCTTGGAGCCATACATACACAGCTAAGATGCCAGGCAATTTTTAACGAGACAGAAGAATTCATTTTATCCATAGATGAACTGAGCAACGAGATTGTTATCTGGGATGCAATGACAACAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTCGGTGCACCCCGCTGGCTTGAACACTCGCCAATAGAGTCTGCTTTTATTTCCTGTGGAACGGATAGGTCAGTTAGGTTCTGGAAAGAAACTCTGTAG 1272 0.4418 MDNRNWDQTLQDGKLYRHLNSLIAASAVASATMTPLNVEAPPNKLLELVAKGLAVEKDDMLKGTASSPFRDSGATPSHLGAAAAPFFYYSAVPDVKGSSKSFPKHETRHLSEHKNVARCARFSPDGRFVATGSADTSIKLFEVSKIKQMLLPDTKDGPVRPVIRTFYDHIQPINDLDFHPQGIILISGAKDQTIKFFDISKTNAKRAYRVIQDTHNVRSVSFHPSGDFVLAGTDHAIPHLYDINTFQCYLSANIPEVGPNGAINQVRYSCTGAMYVTASKDGAIRLWDGITANCVRSITGAHGTAEATSAIFTKDQRFVLSCGKDSTIKLWEVCSGRLVKQYLGAIHTQLRCQAIFNETEEFILSIDELSNEIVIWDAMTTEKVAKWPSNHVGAPRWLEHSPIESAFISCGTDRSVRFWKETL* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0499 423 CDD WD40 106 420 - -
Dod09g0499 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 110 144 - -
Dod09g0499 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 288 - -
Dod09g0499 423 Pfam WD domain, G-beta repeat 262 288 IPR001680 GO:0005515
Dod09g0499 423 Pfam WD domain, G-beta repeat 293 331 IPR001680 GO:0005515
Dod09g0499 423 Pfam WD domain, G-beta repeat 163 198 IPR001680 GO:0005515
Dod09g0499 423 Pfam WD domain, G-beta repeat 107 141 IPR001680 GO:0005515
Dod09g0499 423 Pfam WD domain, G-beta repeat 214 237 IPR001680 GO:0005515
Dod09g0499 423 ProSitePatterns Trp-Asp (WD) repeats signature. 319 333 IPR019775 -
Dod09g0499 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 297 IPR001680 GO:0005515
Dod09g0499 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 341 IPR001680 GO:0005515
Dod09g0499 423 Gene3D - 95 422 IPR015943 GO:0005515
Dod09g0499 423 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 7 422 IPR044633 GO:0005848|GO:0031124
Dod09g0499 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 200 - -
Dod09g0499 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515
Dod09g0499 423 SMART WD40_4 103 142 IPR001680 GO:0005515
Dod09g0499 423 SMART WD40_4 204 242 IPR001680 GO:0005515
Dod09g0499 423 SMART WD40_4 245 288 IPR001680 GO:0005515
Dod09g0499 423 SMART WD40_4 380 420 IPR001680 GO:0005515
Dod09g0499 423 SMART WD40_4 159 198 IPR001680 GO:0005515
Dod09g0499 423 SMART WD40_4 291 332 IPR001680 GO:0005515
Dod09g0499 423 SUPERFAMILY WD40 repeat-like 102 420 IPR036322 GO:0005515
Dod09g0499 423 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Dod09g0499 423 PRINTS G protein beta WD-40 repeat signature 185 199 IPR020472 -
Dod09g0499 423 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Dod09g0499 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 110 151 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0499 163 419 Miscellaneous Gene Families AT5G08390 21.705 1.34e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0499 K14406 - gmx:100809908 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0499 09 7504671 7510217 Dod09g0499 09 7504671 7510217 ECH