Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0472 ATGTCAATCTCAGCAGCTTGGTTTTGGATTTTTGGTATTTATTTTAATGGTTATTCCAGTGATTCGGGTACCCAATTGTATGATCCAAAAGCTGGTGGGTGGCGTGATCTAGGTATGCTTGATGTTATGCAGATATTTGGGCGAGCAGGGAGACCTCAGTTTGACAAAAGTGGTGAAGGTATCATAATTACGTCTCACGATAAACTAGCTTATTATCTGCGTCTGCTGACAAGTCAACTCCCTATAGAAAGCCAGTTTATTAGCTCCTTGAAGGATAATTTAAATGCAGAGGTGGCATTGGGTACTGTAACTAATGTTAAGGAAGCCTGTGCATGGCTTGGCTATACCTATCTTTTCATAAGGATGAGGATGAATCCTTTGGCATATGGTATTGGGTGGGATGAGGTGATGGCAGATCCTGGTTTAAGTTCCAAGCAAAGATCTCTGGTAATTGATGCTGCGCGTGCACTTGATAAAGCAAAAATGATGCGGTTTGATGAGAAAAGTGGCAATTTTTACTGTACCGAACTTGGTCGCATTGCAAGCCACTTTTATATTCAATATTCCAGTGTTGAAACATACAATGAAATGTTGAGACGCCACATGAATGATAGTGAGGTGATTAACATGGTTGCACATTCATCTGAATTTGAGAATATTGTTGTTCGAGAAGAAGAACAAAATGAGCTAGAGATGTTGGCACGTACATCATGCCCATTAGAAATTAAAGGTGGTCCTTCGAATAAACATGGAAAGATTTCCATTTTGATTCAGTTATACATATCTCGAGGTTCTATAGATTCTTTTTCGTTAGTATCTGATGCTGCCTACATAAGTGCAAGCTTGGCTCGTATAATGCGGGCTTTATTTGAGATTTGTCTTCGAAGAGGCTGGTGTGAGATGTGCTTGTTCATGTTGGAATATTGCAAAGCTGTGGATCGCCAAATTTGGCCACACCAACATGCTCTTCGACAATTTGACAAGGACCTTTCTGCAGAAATATTGCGGAAACTTGAAGAACGAGGGGCTGACCTTGATCGCCTGTTTGAGATGGAGGAAAAAGACATTGGGGCATTAATTCGTTATGCACCTGGAGGAAGGTTGGTCAAGCAATACCTGGGGTATTTTCCATCAATTCAGTTATCAGCAACTGTCAGTCCAATAACAAGAACGGTCCTGAAGGTTGATTTGGTGATAATGCCTGTTTTCATTTGGAAAGATCGTTTTCATGGTGCTGCTCAGCGGTGGTGGATTTTGGTAGAGGATTCTGAGAATGATCACATCTACCACTCGGAGCTCTTTACTCTGACAAAGCGGATGGCTAAGGGGGAACCTTACAAGCTTTCCTTCACTGTGCCTATTTTTGAACCACATCCCCCCCAGTATTACATTCATGCCATTTCTGATTCTTGGCTTCATTCAGAGGCATTCTACACTATCACTTTTCATAATTTACCATTGCCGGAGGCTCGGACTGCTCACACTGAACTCCTTGATTTAAAACCTCTTCCTGTGTCTTCCATTGGAAACAGTGCTTATGAAGGATTATATAAATTTTCACATTTTAATCCTATACAAACACAGACTTTTCACGTCTTGTATCACACAGACAATAATGTTCTCTTAGGAGCTCCAACTGGAAGTGGAAAAACAATATCTGCTGAGCTTTCTATGCTTCGTCTTTTCAACACACAGCCTGATATGAAGGTTATTTATATAGCACCTTTGAAGGCAATTGTTAGGGAAAGAATGAGTGATTGGCAAAAGCGTCTTGTCTCTCAGCTGGGGAAAAAGATGGTTGAAATGACTGGAGACTATACACCAGATTTGATGGCCCTCCTGTCGGCAGATATCATCATATCTACTCCTGAAAAGTGGGATGGTATTAGTCGAAATTGGCATAGTCGTAGCTATGTCACAAAGGTTGGACTTATGATATTGGATGAGATTCACTTGTTGGGAGCTGATCGTGGGCCCATACTTGAGGTTATCGTTTCTAGGATGAGATATATATCATCACAGACAGAACGTGCAGTAAGGTTTATTGGCCTTTCAACAGCTCTGGCTAATGCTGGTGATCTTGCTGATTGGTTAGGCGTTGAGGAGATTGGACTCTTCAATTTCAAACCAAGTGTGAGGCCTGTACCTCTAGAAGTACATATTCAGGGATATCCTGGAAAGTATTACTGCCCAAGGATGAACAGTATGAATAAACCAGCATATGCTGCAATATGCACACATTCTCCTGCAAAACCAGTTCTTATATTTGTCTCATCACGACGCCAGACAAGGCTTACTGCACTGGACTTAATTCAGTTTGCTGCTTCGGACGAGCATCCGAGGCAATTCCTTAATATGCCAGAAGATGCATTGCAGATGGTTCTGTCTCAAGTCTCTGATCAAAACCTGAGGCATACTTTACAATTTGGCATTGGGTTACACCATGCTGGGCTGAATGACAGAGACAGATCACTGGGTACAGAATACTATGATGGAAAATCAAAGAGGTGTTTTTGCATGTCTTATCTGCTGCTTCTGAATTTGATGAACTTCCCAGTGCGTCATAACGAGGAAAAATACAATGAAGCACTGTCTGAGAAAGTTAAATATCCAGTGGATAAGAACCGTCTGGATGACCCTCATGTCAAAGCTAATCTTCTATTTCAGGCTCACTTTTCTCAGTTGGAGTTACCAATTAGTGACTATGTCACGGACTTGAAATCAGTATTAGATCAGAGTATACGCATAATTCAGGCCATGATTGATATATGTGCAAATAGCGGTTGGCTTTCAAGCTCAATTACGTGCATGCATCTTTTGCAAATGATCATGCAGGGTTTGTGGTTTGATAACGACTCTTCCTTATGGATGCTGCCATGCATGAATGCTGAGCTGAAAAGTTCCCTTAGCAGAAGCGGAATTTCCAGTGTACCGGAATTAATAGATATTCCCAAGGCGGCATTGCAAAATGTAACTGGAAATTTTCCAGCTTCAAGATTGCACCAGGATCTACAGCACTTTCCTCGTGTTAAAACGAAGTTAAAGCTTCAGAGGAGGGATACTGATGGTGAGAGCTCCCAAACATTGCACATCAGATTAGAGAAGATCAATTCTAGGCGACACTCTTCTAGAGCATTTGTACCTCGGTTTCCAAAGATAAAAGATGAACAATGGTGGTTGATTCTTGGTAATACCACTATGTCTGAGCTATATGCTTTGAAAAGAGTTTCTTTTTCTGATGTCTTGGTTACCTCCATGAAGCTTCCTCAAACTCCAGCTAATCTGAAGGGTATGAAACTCATGTTAGTCTCGGATTGTTACATTGGGTTTGAACAAGAACGCTCCATTGAAGAACTTGTTGAAGGTCGGCATTAG 3375 0.4133 MSISAAWFWIFGIYFNGYSSDSGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMADPGLSSKQRSLVIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVINMVAHSSEFENIVVREEEQNELEMLARTSCPLEIKGGPSNKHGKISILIQLYISRGSIDSFSLVSDAAYISASLARIMRALFEICLRRGWCEMCLFMLEYCKAVDRQIWPHQHALRQFDKDLSAEILRKLEERGADLDRLFEMEEKDIGALIRYAPGGRLVKQYLGYFPSIQLSATVSPITRTVLKVDLVIMPVFIWKDRFHGAAQRWWILVEDSENDHIYHSELFTLTKRMAKGEPYKLSFTVPIFEPHPPQYYIHAISDSWLHSEAFYTITFHNLPLPEARTAHTELLDLKPLPVSSIGNSAYEGLYKFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKTISAELSMLRLFNTQPDMKVIYIAPLKAIVRERMSDWQKRLVSQLGKKMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLNMPEDALQMVLSQVSDQNLRHTLQFGIGLHHAGLNDRDRSLGTEYYDGKSKRCFCMSYLLLLNLMNFPVRHNEEKYNEALSEKVKYPVDKNRLDDPHVKANLLFQAHFSQLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMIMQGLWFDNDSSLWMLPCMNAELKSSLSRSGISSVPELIDIPKAALQNVTGNFPASRLHQDLQHFPRVKTKLKLQRRDTDGESSQTLHIRLEKINSRRHSSRAFVPRFPKIKDEQWWLILGNTTMSELYALKRVSFSDVLVTSMKLPQTPANLKGMKLMLVSDCYIGFEQERSIEELVEGRH* 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0472 1124 SUPERFAMILY Sec63 N-terminal domain-like 850 993 - -
Dod09g0472 1124 PANTHER SEC63 DOMAIN-CONTAINING 23 833 - -
Dod09g0472 1124 PANTHER SEC63 DOMAIN-CONTAINING 850 1118 - -
Dod09g0472 1124 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 531 706 IPR014001 -
Dod09g0472 1124 SMART ultradead3 518 722 IPR014001 -
Dod09g0472 1124 Pfam DEAD/DEAH box helicase 524 688 IPR011545 GO:0003676|GO:0005524
Dod09g0472 1124 Gene3D - 21 83 IPR027417 -
Dod09g0472 1124 Gene3D C2 domain 1008 1120 IPR035892 -
Dod09g0472 1124 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 850 1118 - -
Dod09g0472 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 706 IPR027417 -
Dod09g0472 1124 Pfam Sec63 Brl domain 174 480 IPR004179 -
Dod09g0472 1124 Gene3D - 175 317 - -
Dod09g0472 1124 Gene3D - 515 713 IPR027417 -
Dod09g0472 1124 Gene3D - 714 841 IPR027417 -
Dod09g0472 1124 SUPERFAMILY Sec63 N-terminal domain-like 202 377 - -
Dod09g0472 1124 Gene3D - 851 949 - -
Dod09g0472 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 708 825 IPR027417 -
Dod09g0472 1124 Gene3D C2 domain 376 485 IPR035892 -
Dod09g0472 1124 SMART Sec63_2 174 482 IPR004179 -
Dod09g0472 1124 SMART Sec63_2 826 1118 IPR004179 -
Dod09g0472 1124 Gene3D - 319 373 - -
Dod09g0472 1124 SUPERFAMILY E set domains 1025 1116 IPR014756 -
Dod09g0472 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 81 IPR027417 -
Dod09g0472 1124 SUPERFAMILY "Winged helix" DNA-binding domain 81 186 IPR036390 -
Dod09g0472 1124 CDD DEXHc_ASCC3_2 521 709 - -
Dod09g0472 1124 Pfam Sec63 Brl domain 850 1116 IPR004179 -
Dod09g0472 1124 Gene3D - 84 173 IPR036388 -
Dod09g0472 1124 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 23 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0472 Dod-Chr9 6990125 7017585 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0472 K18663 - gmx:100811503 1573.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0472 09 6990125 7017585 Dod09g0472 09 6990125 7017585 ECH