Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0467 ATGGGAAGTGATGACGGCCTGAAGACATGGGTATCGGATAAGTTGATGTCACTGCTGGGATATTCTCAGCCCACAGTTGTACAGTACATGATTGGACTATCTAAGCAAGCTACTTCACCTGCTGATTTGGCGGGCAAACTAGTGGAGTTTGGGATTGCGTCAACAGAGACTCGTGCATTTGCTGAACAAATATTCTCAAGAGTTCCTCGTAGATCGTCTGGTTTAAATCAATATCAGAAACAAGAGAGAGAAGCTGCAATGTTGGTGAAGAAGCAGCAGACTTACTCGATTTTGAAGGCTGATGACGAGAATGATGATGACTATGTTGGTGGTGAAGATAAATCTTCCATAGCTACTGCTTCTATGTCTAGAAAGCTTGGCAGTAATAAAAAACGTTTTAGGAAGAAAACTGAAGTTGAAGATGATGAAGATGATGAGGTGATTTTAAAAAAGGAAAGGCAGAAAGTCAGGAGACAAACTTCCCCTGGTGAAGATTCTGGATCAGAGTCTGAAGAAGAAAGAGAAGAAAGATTAAAAGATCAAAGAGAGAAGGAAGAATTAGAGCGACATTTAAAAGAAAAAGATGCCGTGGGGACAAGAAAGTTGACTGAACAAAAATTGACAAGAAAGGAAGAAGAAGAGGCAATTCGAAGATCTAATGCTGCCGAGCAGGATGATATTCATAGTTTGAGAAAGGTTTCAAGACAAGAATACTTGAAGAAAAGGGAGGAAAAGAAATTAGAAGAACTGAGAGATGATATCGAAGATGAACAATATCTATTTGAGGGTGTGAAGCTTACAGAAGCAGAATATCGTGAGTTTAGGTACAAGAAAGAGATATATGAACTTGTGAAGAAGCGGTCAGAGGAGGCTGACAATGTGAATGAGTACAGGATGCCAGAAGCTTATGATCAGGAAGGTGGTGTTAATCAGGAGAAGAGATTTTCTGTGGCTATGCAACGATACAGGGATCCAAATGCTGAGGATAAGATGAATCCATTCGCTGAACAGGAGGCATGGGAGGAACATCAAATTGGAAAGGCAACGCTGAAGTATGGTTCAAAAAATAAGAAACAAGCCTCTGACGACTATCAGTTTGTGTTTGAGGATCAGATTGATTTTATCAAGGCATCAGTGATGGATGGAGATAATTTTGATTATGAAGAGATGGAAGATTCACTTGAAAAGTCCAGAGCGAAGTCAGCTTTAGAGGCACTTCTGGAGGAGAGGAAAAAGTTACCCATTTACCCTTATCGGGAGGAATTGCTCCAAGCTGTTCGTGATCATCAGGTGCTTGTAATTGTTGGTGAAACTGGTTCTGGAAAGACAACACAGATTCCCCAATATCTTCATGAGGCTGGCTACACAAAGCATGGAATGGTTGGTTACTCCATCCGCTTTGAAGATTGCACATCAGAGAAGACTATTCTGAAATATATGACAGATGGAATGTTATTGAGGGAATTTCTCGGTGAGCCTGATCTGGCAAGTTATAGTGTTGTGATGGTGGATGAGGCTCATGAGAGAACACTCTCAACTGATATTTTGTTTGGATTAGTAAAGGATATTTCTCGTTTTCGGCCTGATCTCAAGTTACTGATATCAAGTGCTACACTTGATGCGGAGAAGTTCAGTGACTACTTTGATTCTGCTCCAATATTCAAAATTCCAGGGAGACGGTATCCTGTTGAAATAAACTTTACCAAAGCACCTGAAGCTGATTACTTGGATGCAGCTATTGTCACATCACTTCAAATCCATGTCACCCAACCTCCTGGAGACATATTGGTGTTCCTTACTGGTCAAGAAGAGATTGAAACAGCTGAAGAAATCTTGAAGCATCGAATTGGAGGGTTGGGCACTAAAATTGCTGAGTTAATAATATGCCCTATATATGCCAACCTACCGACTGAGCTACAAGCTAAAATATTTGAACCCACTCCTGAAGGGGCACGAAAGATTGTCCTTGCAACTAATATTGCTGAAACATCATTAACAATTGATGGGATCAAGTATGTCATTGATCCAGGATTCTGTAAGATGAAAAGTTATAATCCAAGGACGGGAATGGAGTCCTTGTTAATAACACCCATCTCAAAAGCTTCAGCAATGCAAAGAGCAGGTCGTTCCGGGAGAACAGGTCCTGGAAAGTGCTTCCGATTATATACTGCATATAATTTTCACCATGATTTGGATGATAATACTGTGCCAGAAATACAGCGGACTAACCTTGCAAATGTAGTATTGACTTTAAAAAGTCTTGGTATTCATGACTTGCTGCACTTTGATTTTATGGATCCTCCTCCTGCAGAGGCCTTATTGAAAGCTCTAGAACTTCTATTTGCATTAAGTGCTTTAAATAAGCTTGGTGAGTTAACAAAGGTGGGTAGGCGGATGGCAGAGTTCCCACTTGATCCTATGTTGTCAAAAATGATAGTAGCTTCAGAAAAGTACCAGTGTTCAGATGAGATTATTTCTATTGCTGCTATGCTTTCTGTTGGCAACTCAATATTTTACCGCCCAAAGGATAAACAAGTTCATGCAGACAATGCAAGGTTGAATTTTCATACTGGAAACGTTGGGGACCATATTGCATTGCTAAAGGTCTACAATTCTTGGAAGGAGACAAATTATTCAACGCAATGGTGTTATGAAAATTATATTCAGGTAAGAAGTATGAAGCGGGCTAGGGATATCCGTGATCAACTTGCAGGTCTATTAGAGCGGGTTGAGATCGAACTAACGTCAAATTCTAATGATTTTGATGTCATCAAGAAATCCATAACATCTGGATTTTTCCCACATTCTGCACGACTGCAAAAGAATGGTTCATATCGGACTGTAAAACATCCACAGACTGTTCACATACATCCTAGTTCAGGGCTGGCACAGGTTCTTCCACGATGGGTTGTATACCATGAACTAGTGCTTACAACTAAGGAATATATGAGACAGGTCACAGAATTAAAGCCCGAGTGGTTGGTGGAGATAGCTCCTCACTATTACCAGCTCAAGGATGTTGAAGATTCGGGTTCCAAGAAAATGCCTCGAGGAGAAGGACGCGCATAA 3069 0.406 MGSDDGLKTWVSDKLMSLLGYSQPTVVQYMIGLSKQATSPADLAGKLVEFGIASTETRAFAEQIFSRVPRRSSGLNQYQKQEREAAMLVKKQQTYSILKADDENDDDYVGGEDKSSIATASMSRKLGSNKKRFRKKTEVEDDEDDEVILKKERQKVRRQTSPGEDSGSESEEEREERLKDQREKEELERHLKEKDAVGTRKLTEQKLTRKEEEEAIRRSNAAEQDDIHSLRKVSRQEYLKKREEKKLEELRDDIEDEQYLFEGVKLTEAEYREFRYKKEIYELVKKRSEEADNVNEYRMPEAYDQEGGVNQEKRFSVAMQRYRDPNAEDKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQFVFEDQIDFIKASVMDGDNFDYEEMEDSLEKSRAKSALEALLEERKKLPIYPYREELLQAVRDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRIGGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKIVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLITPISKASAMQRAGRSGRTGPGKCFRLYTAYNFHHDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLHFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASEKYQCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTSNSNDFDVIKKSITSGFFPHSARLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKDVEDSGSKKMPRGEGRA* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0467 1022 Gene3D - 460 559 IPR027417 -
Dod09g0467 1022 Gene3D - 375 459 IPR027417 -
Dod09g0467 1022 Gene3D - 560 735 IPR027417 -
Dod09g0467 1022 PANTHER OS05G0389800 PROTEIN 460 1020 - -
Dod09g0467 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 908 IPR027417 -
Dod09g0467 1022 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 924 1001 IPR011709 -
Dod09g0467 1022 Coils Coil 233 260 - -
Dod09g0467 1022 CDD SF2_C_RHA 561 722 - -
Dod09g0467 1022 PANTHER ATP-DEPENDENT RNA HELICASE 460 1020 - -
Dod09g0467 1022 PANTHER ATP-DEPENDENT RNA HELICASE 111 457 - -
Dod09g0467 1022 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 445 557 IPR014001 -
Dod09g0467 1022 MobiDBLite consensus disorder prediction 120 235 - -
Dod09g0467 1022 Pfam Helicase associated domain (HA2) 776 850 IPR007502 GO:0004386
Dod09g0467 1022 Gene3D - 760 918 - -
Dod09g0467 1022 SMART ha2_5 775 867 IPR007502 GO:0004386
Dod09g0467 1022 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 580 755 IPR001650 -
Dod09g0467 1022 SMART ultradead3 411 566 IPR014001 -
Dod09g0467 1022 Coils Coil 168 195 - -
Dod09g0467 1022 MobiDBLite consensus disorder prediction 133 235 - -
Dod09g0467 1022 PANTHER OS05G0389800 PROTEIN 111 457 - -
Dod09g0467 1022 Coils Coil 893 913 - -
Dod09g0467 1022 SMART helicmild6 606 714 IPR001650 -
Dod09g0467 1022 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 499 508 IPR002464 -
Dod09g0467 1022 Pfam Helicase conserved C-terminal domain 587 714 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0467 Dod-Chr9 6865969 6884198 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0467 K12813 - gmx:100809559 1730.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0467 09 6865969 6884198 Dod09g0467 09 6865969 6884198 ECH