Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0453 ATGAGTTCATCAGAAGCAGCAGCAACAACCACGAAAGGCGGCAGAGGCAAACCAAAAGCCTCAAAGGCCGTCTCTAGGTCCACCAAGGCCGGCCTCCAGTTCCCCGTCGGCCGCGTCGCCCGTTACCTCAAGGCCGGCCGTTATGCCCAGCGGGTCGGATCCGGCTCACCCGTTTACCTCTCCGCCGTCCTCGAATACCTCGCTGCCGAGGTTCTGGAGCTTGCTGGGAACGCAGCGAGGGACAACAAGAAGACGAGGATCATACCGAGGCACATTCAGCTTGCGGTTAGGAACGACGAGGAGCTGAGCAAGTTGATGGGGTCGGTGACCATTGCCAACGGAGGTGTTCTGCCAAACATCCACCAGAACTTGTTGCCCAAGAAGGCTGCTGCTGGAGGGAAGGGAAGTAAGGCCGAGATTGGATCTGCCAGTCAGGAGTTTTAG 444 0.5856 MSSSEAAATTTKGGRGKPKASKAVSRSTKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIANGGVLPNIHQNLLPKKAAAGGKGSKAEIGSASQEF* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0453 147 ProSitePatterns Histone H2A signature. 30 36 IPR032458 -
Dod09g0453 147 Gene3D Histone, subunit A 9 134 IPR009072 GO:0046982
Dod09g0453 147 Pfam C-terminus of histone H2A 100 132 IPR032454 -
Dod09g0453 147 PRINTS Histone H2A signature 22 44 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dod09g0453 147 PRINTS Histone H2A signature 80 94 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dod09g0453 147 PRINTS Histone H2A signature 66 79 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dod09g0453 147 PRINTS Histone H2A signature 51 66 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dod09g0453 147 PRINTS Histone H2A signature 108 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dod09g0453 147 MobiDBLite consensus disorder prediction 1 27 - -
Dod09g0453 147 CDD H2A 16 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dod09g0453 147 PANTHER HISTONE H2AXA-RELATED 8 145 - -
Dod09g0453 147 PANTHER HISTONE H2A 8 145 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dod09g0453 147 SUPERFAMILY Histone-fold 25 128 IPR009072 GO:0046982
Dod09g0453 147 Pfam Core histone H2A/H2B/H3/H4 13 97 IPR007125 GO:0003677
Dod09g0453 147 SMART h2a4 11 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0453 Dod-Chr9 6682891 6683729 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0453 K11251 - gmx:100787899 231.106