Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0422 ATGTTGAACCACCTTCGTCGTCGCTGCTGCTGGTGCAGGAAGCCCACCACCATTCCCAACCGCGCTTCACCAATCACCACTGCCGCCACACCCTCCTCCACTTCAAACCACCCTCACGCCGCCCTCACCGACATCCTAACGGCCTCCAACTTCAACATCTCCGAAGCTACCTCGCTCACCAAACACCTCTTCCACTCTCTCCTCCTCCAGAAAACCCCCACGCGCACCGCATCTTCCTCCCTCTTCCACGCGCTCACCACCCACTCGCCGACCCCCAACGCCTTCTCCGTCCTCGTGATCGCCTTCTGCGAAATGGGTCTCGTCGAAGAAGCCCTTTGGGTATACAACAGGGTGGCGGGTTCTCTGCCTCTGTTGAAGGCTTGCAATGCGCTTCTTCACGCGCTGGTCAAGACGGACAGGTTTGATTCCGTGTGGGAGGTGTACGGGAACATGGTGTCGCGCAGATTCTCCCCTACGGTTGTTACCTACGGCATTCTGATGCAGTGTTGCTGCAACCAAGGCGATTCCGTTGGTGCACGCAAGGTGTTCGGTGAAATGCTTGAACGTAAAATTGAACCCACCGTTGTGGTTTACACTATACTGATCCGTGTTTTTTGCAACGAGGGTCTAATGGGTGATGCTGAGGGCGTGTTTGGGTTGATGAGGGAATCTGGGGTGGCGCCTAATTTGTACACTTACAAGACTCTCATGGATGGGTATGGGAAGGTGGCTGACGTGAAACGGGTTCTTGAGTTGTATGGCGAAATGCTAATGCAAGGGTTGCACCCCGATATTGTGACATTTGCTACTATGATAGATGTTCTGTGCAAGCTGGGACATTTGAAGGCTGCGTGGAATTGTTTCACGTTTATGGTGAAATTCGGCATTGTTCCTAATGTGTATGCTTATAATTCCTTGATTGGTGGATACTGTAAGGCAGGGAACATGCCAGAGGCAATGCATTTAAAGGTAGAAATGGAAAGGTCTGAAATCTCGCCGGATGTTTTCACTTACAATATACTCATTAAGGGTCTTAGTGACTTGGGGAGATTGGAAGAAGCTGAGGAGTTGATGCGGAAAATGGAGACTGCTGGGGTAGTTGCAAACTCTGTGACATACAACGTGATGATTGATGGGTGCTGCAAGAAAGGCGATATGGAGAAGGCTACTGAGGTGTGTTCCCAAATGAGTGAAAGGAAAATTGAGCCCAATGTTATAACATTTTCTACATTGATTGATGGGTTTTGCAAGAAAGGAAATGTAAAAGCTGCAATGGGGTTGTATACAGAAATGGTGATCAAAGGTCTTGTGCCAGATGTGGTAACTTACACGGCTTTGATTGACGGGCAGTGCAAGGATGGGAACATGAAAGAGGCTTTCAGGCTACTCAAGGAGATGGTTGATGCAGGACTAACACCCAATGTGTTTACAGTTAGTTGTTTAATTGATGGTCTTTTGAAAGAGGGAAGGACATATGATGCAATTAAACTGTTCTTGGAGAAAACTGGAGCTGGTTGCCCTGGAGATAAAATGGATGGCAGCTTATGTTCCCCAAACAGTGTGATGTATTCCATTTTAATTCAAGGTTTATGCAAAGATGGACAGATTTTTGAGGCCACCAAGTTTTTTTCTGACATGAGATGTAATGGTTTCCAACCAGACATGCTAGTTTATGTTATCATGTTGCAGGCACATTTCCCATACAAGCACTGTGCTCGATGCAATGATGCTGCATGCAGATATAGTGAAGATAGGGTTTATGCGAAATACTTCCATACATCGTGTATTGTCTAG 1794 0.4749 MLNHLRRRCCWCRKPTTIPNRASPITTAATPSSTSNHPHAALTDILTASNFNISEATSLTKHLFHSLLLQKTPTRTASSSLFHALTTHSPTPNAFSVLVIAFCEMGLVEEALWVYNRVAGSLPLLKACNALLHALVKTDRFDSVWEVYGNMVSRRFSPTVVTYGILMQCCCNQGDSVGARKVFGEMLERKIEPTVVVYTILIRVFCNEGLMGDAEGVFGLMRESGVAPNLYTYKTLMDGYGKVADVKRVLELYGEMLMQGLHPDIVTFATMIDVLCKLGHLKAAWNCFTFMVKFGIVPNVYAYNSLIGGYCKAGNMPEAMHLKVEMERSEISPDVFTYNILIKGLSDLGRLEEAEELMRKMETAGVVANSVTYNVMIDGCCKKGDMEKATEVCSQMSERKIEPNVITFSTLIDGFCKKGNVKAAMGLYTEMVIKGLVPDVVTYTALIDGQCKDGNMKEAFRLLKEMVDAGLTPNVFTVSCLIDGLLKEGRTYDAIKLFLEKTGAGCPGDKMDGSLCSPNSVMYSILIQGLCKDGQIFEATKFFSDMRCNGFQPDMLVYVIMLQAHFPYKHCARCNDAACRYSEDRVYAKYFHTSCIV* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0422 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Dod09g0422 597 PANTHER ATPASE EXPRESSION PROTEIN 3 33 571 - -
Dod09g0422 597 SUPERFAMILY HCP-like 275 471 - -
Dod09g0422 597 Pfam PPR repeat family 518 564 IPR002885 -
Dod09g0422 597 Pfam PPR repeat family 369 417 IPR002885 -
Dod09g0422 597 Pfam PPR repeat family 298 346 IPR002885 -
Dod09g0422 597 Pfam PPR repeat family 158 207 IPR002885 -
Dod09g0422 597 Pfam PPR repeat family 232 277 IPR002885 -
Dod09g0422 597 Pfam PPR repeat family 438 487 IPR002885 -
Dod09g0422 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Dod09g0422 597 SUPERFAMILY TPR-like 76 287 IPR011990 GO:0005515
Dod09g0422 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Dod09g0422 597 TIGRFAM PPR: pentatricopeptide repeat domain 231 265 IPR002885 -
Dod09g0422 597 TIGRFAM PPR: pentatricopeptide repeat domain 441 475 IPR002885 -
Dod09g0422 597 TIGRFAM PPR: pentatricopeptide repeat domain 371 405 IPR002885 -
Dod09g0422 597 TIGRFAM PPR: pentatricopeptide repeat domain 406 440 IPR002885 -
Dod09g0422 597 TIGRFAM PPR: pentatricopeptide repeat domain 196 229 IPR002885 -
Dod09g0422 597 TIGRFAM PPR: pentatricopeptide repeat domain 521 554 IPR002885 -
Dod09g0422 597 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Dod09g0422 597 TIGRFAM PPR: pentatricopeptide repeat domain 301 335 IPR002885 -
Dod09g0422 597 TIGRFAM PPR: pentatricopeptide repeat domain 266 300 IPR002885 -
Dod09g0422 597 TIGRFAM PPR: pentatricopeptide repeat domain 161 195 IPR002885 -
Dod09g0422 597 TIGRFAM PPR: pentatricopeptide repeat domain 127 160 IPR002885 -
Dod09g0422 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Dod09g0422 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Dod09g0422 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Dod09g0422 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Dod09g0422 597 PANTHER OSJNBA0060P14.6 PROTEIN 33 571 - -
Dod09g0422 597 Gene3D Tetratricopeptide repeat domain 509 589 IPR011990 GO:0005515
Dod09g0422 597 Gene3D Tetratricopeptide repeat domain 46 179 IPR011990 GO:0005515
Dod09g0422 597 Gene3D Tetratricopeptide repeat domain 180 289 IPR011990 GO:0005515
Dod09g0422 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Dod09g0422 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Dod09g0422 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Dod09g0422 597 Gene3D Tetratricopeptide repeat domain 434 503 IPR011990 GO:0005515
Dod09g0422 597 Gene3D Tetratricopeptide repeat domain 365 433 IPR011990 GO:0005515
Dod09g0422 597 Gene3D Tetratricopeptide repeat domain 290 364 IPR011990 GO:0005515
Dod09g0422 597 Pfam PPR repeat 128 155 IPR002885 -
Dod09g0422 597 Pfam PPR repeat 95 117 IPR002885 -
Dod09g0422 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0422 92 565 Glycosyltransferase AT1G05670 30.353 5.28e-71 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0422 - - aip:107623733 745.347