Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0245 ATGCGGGGTGAGCTTAGCCACATCTCAATCGACTTCGTTCGATGTGACAGTGGACAGGAGGATGCGCACCTTCTCGGACACTTTGGTGGGGATGGCGATGTGCTGGTTGATGGTGGCCGACGGGATGGAGATCTGGCGGTGTTCGTGGGGCATGCGCTTCTGGTCCTTCACTGCGTAGTGCCTCTCTCCTCCGCCGCAGCTTGCTTCGTCGTTGACATTCATCACACCTGCTATTGCGAGTGGTTTCATTGGCTCCATTCTGAACTCAACAATATATGCCAGTCCCTGTTAAGGGCCAAACAGTTGCATGCTTTTCTTTTGAGGACCCATCTCTTAGAGGACCCCTTTTATGCAACCAAAATTGTTAGGCTCTATGCAGCCAACAATGACATCAACTGTGCCTACCAAGTGTTTGACAAAACTTCCACTCGAAGCGTCTACCTATGGAACTCCATGATTCGAGCTTATGCTCAGTCCCAGAGATTCGGCAATGCAGTCTCTCTATTTAGAACCATGCTTGGGGCTGACGCAAGTCCTGACAATTACACATATGCTTGTGTTATTCGCGCCTGCTGTGACAACTTTGATTTTGGCATGCTGAGGCTTGTTCATGCGGGGGCTGTGACTTCAGGGTTGGGATTGGATCCTATTTGTTGCAGTGCACTTGTGGCAGCTTATTCAAAACTTGGTCTTGTTAATGAAGCAGGTAGAGTGTTTAATGGGATCATTGCACCGGACCTTGTTTTGTGGAATTCTCTGATTTCTGGTTATGGTTGCTCTGGTCAATGGGATATGGGGATGCAGACGTTTAACTCTATGAGACATTTTGGTCAGAAGCTAGATGAATATACACTGGCTGGGTTGCTTGGGGGTATTGAAGATTCTAGCTTGCTGGGCATTGGCCAAGGATTGCATGGTTTAAGTCTGAAGAGTGGGCTAGATTCTGATTCTCATGTAGGTAGTTTACTGGTGAGTATGTACTCTAGATGTATGTGCATTGCTTCGGCATATAGAGCCTTTTGCTGTATTTTCCAACCTGATTTGGTCACATGGTCTGCTCTTATAGCTGGGTATGCTCAGTCTGGGGAGTATGAGAAAGCCTTGCTCTTTTTCAGAAAATTAAACATGGAAAACAAGAAGGTTGATTCTGTTTTGATTGCTACTCTATTGTCTGCTATAGCTCAGGCAGCGAATATAGGACCAGGACGTGAGATGCATGGTTATGTTATTAGGCATGGATTCGAATCACATGTCAAGGTTTCTTCGGCTCTCATAGACATGTACTCAAAGTGTGGCTTCTTGCACTTGGGAATTTGTGTTTTCGGAATAATGCCAGAACGGAATATAGTTTCTTATAACTCGGTCATTTCAGGTCTTGGTTTGTATGGTTGTGCTTCTGAGGCTTTCAGGATGTTTGATAAGATGCTGGAGAAAGGATTAGTACCTGATGAAGCCACATTTTCTGCTCTACTTTGTGCTTGTTGTCATGCCGGCCTTGTGAAACATGGCCGGGAGATTTTCCGAAGAATGAAAGATGAATTTGGCATCATAGCCAGGCCGGAGCACTATGTTTACATGGTGAAGCTTCTTGGCAATGCTGGGGAGTTAGAAGAGGCTTACAATCTCACTAAGTCCCTACCAGAACCAGTAGACAAGGCCATCCTGGGAGCCCTATTATCATGCTGCAATTCTTGTGGAAATTTGGAGCTGGCAGAAGCTGTAGCTCAGCAGCTTTTTGAAAGTAATCCTGATGATAATGCTTACAGGGTTATGCTTTCTAATATATATGCTGGTGATGGGAGGTGGGATGATGTGAAGAATTTGAGGGATAAAATAACAGGAGGTCTGAGAAAAATGCCTGGACTAAGCTGGATTGAAGGTAGCTTTTGCTAA 1893 0.4543 MRGELSHISIDFVRCDSGQEDAHLLGHFGGDGDVLVDGGRRDGDLAVFVGHALLVLHCVVPLSSAAACFVVDIHHTCYCEWFHWLHSELNNICQSLLRAKQLHAFLLRTHLLEDPFYATKIVRLYAANNDINCAYQVFDKTSTRSVYLWNSMIRAYAQSQRFGNAVSLFRTMLGADASPDNYTYACVIRACCDNFDFGMLRLVHAGAVTSGLGLDPICCSALVAAYSKLGLVNEAGRVFNGIIAPDLVLWNSLISGYGCSGQWDMGMQTFNSMRHFGQKLDEYTLAGLLGGIEDSSLLGIGQGLHGLSLKSGLDSDSHVGSLLVSMYSRCMCIASAYRAFCCIFQPDLVTWSALIAGYAQSGEYEKALLFFRKLNMENKKVDSVLIATLLSAIAQAANIGPGREMHGYVIRHGFESHVKVSSALIDMYSKCGFLHLGICVFGIMPERNIVSYNSVISGLGLYGCASEAFRMFDKMLEKGLVPDEATFSALLCACCHAGLVKHGREIFRRMKDEFGIIARPEHYVYMVKLLGNAGELEEAYNLTKSLPEPVDKAILGALLSCCNSCGNLELAEAVAQQLFESNPDDNAYRVMLSNIYAGDGRWDDVKNLRDKITGGLRKMPGLSWIEGSFC* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0245 630 Pfam E motif 567 626 IPR046848 -
Dod09g0245 630 TIGRFAM PPR: pentatricopeptide repeat domain 450 484 IPR002885 -
Dod09g0245 630 TIGRFAM PPR: pentatricopeptide repeat domain 147 180 IPR002885 -
Dod09g0245 630 TIGRFAM PPR: pentatricopeptide repeat domain 349 374 IPR002885 -
Dod09g0245 630 TIGRFAM PPR: pentatricopeptide repeat domain 248 281 IPR002885 -
Dod09g0245 630 TIGRFAM PPR: pentatricopeptide repeat domain 486 513 IPR002885 -
Dod09g0245 630 Gene3D Tetratricopeptide repeat domain 423 628 IPR011990 GO:0005515
Dod09g0245 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Dod09g0245 630 Gene3D Tetratricopeptide repeat domain 201 299 IPR011990 GO:0005515
Dod09g0245 630 Gene3D Tetratricopeptide repeat domain 80 200 IPR011990 GO:0005515
Dod09g0245 630 Gene3D Tetratricopeptide repeat domain 304 402 IPR011990 GO:0005515
Dod09g0245 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Dod09g0245 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 513 IPR002885 -
Dod09g0245 630 PANTHER OS01G0545900 PROTEIN 82 626 - -
Dod09g0245 630 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 82 626 - -
Dod09g0245 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Dod09g0245 630 Pfam PPR repeat 248 277 IPR002885 -
Dod09g0245 630 Pfam PPR repeat 218 240 IPR002885 -
Dod09g0245 630 Pfam PPR repeat 349 374 IPR002885 -
Dod09g0245 630 Pfam PPR repeat family 145 192 IPR002885 -
Dod09g0245 630 Pfam PPR repeat family 447 496 IPR002885 -
Dod09g0245 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0245 Dod-Chr9 3651418 3656208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0245 105 626 Glycoside Hydrolase AT3G49170 30.508 1.36e-74 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0245 - - gmx:100820049 886.33