Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0228 ATGAGTGTTCCTATGGAGGAGGAGGAGGTGGTGGAGGTGACACTGACCACCCTCCAAAACCAAAACCAAAACCCCCAAACCCATGAAAACGGCGTCGTCCCGTCATCTCCTCCTTCTCCCATGCTTCCCGAGGACAAGGTCCTTCTCCCTGTTGAGGTGTGCTTAAAGCCTTCTAGCACGGCTCCCATCCACGATGTTCGCTCAGCCGTTGAGAGGATGCTCGAGAAGAGGAGTTTGAGCTATTGTGATGGACCCATTCCCCTGCCTCCTGACGAAACGTTTCTCGCCGATAACGTCCATAAAATTTGTGTTTGTGATACAGATGAAGGGATGCACAATGATAACGTTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTGCATGTCTTTCAGCTTAGTGAGGAAGGACCATGTGAGGAAATAAGTTCAGATGGCCAGTCTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAGAGTTTAATATTCGAATCTGGTCTAAAGCAAAGGTTGTTACATTATGCAGCAAGTGCGCTGCTCTTTACTGAAAAGGGTGTTGATCCATTCCTTGTTTCATGGAATCGCATAATCCTTTTACATGGACCCCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCTCAGAAATTGTCAATTCGATTCAATTTGAGATACCCGCAATGCCAGCTTATTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCAAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTAGTATTTGTTTTGATTGATGAAGTTGAAAGCCTTGCTGCTGCTAGAAAAGCAGCTTTATCCGGTTCCGAACCTTCAGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCGTCTCCTAATGTGATAATTTTGACCACATCCAACATAACTGCTGCTATTGATATTGCTTTTGTTGATCGAGCAGATATCAAAGCTTATGTCGGTCCCCCAACTCTTCAAGCTCGCTATGAAATATTAAGGTCTTGCTTGCAGGAACTGATGCGTACAGGGATCTTAACTAGTTTACAGGATTGTGAGGTCATGCTTCCAAGTTATGCCAGTGCAAAGGAGAGGTTGAACACGCCAGATTTTAATGAGGCTGCTGTACCCATGCAACTGTGCAAGCAACTACTTGAAACTGCTGCGGCATGTGAGGGAATGAGTGGGAGGTCTCTGAGAAAGCTTCCATTTCTGGCACATGCTGCCCTAGCCAATCCTTTTGATTGCACCCCTGTTAAGTTCTTGTGTACCATGATAGAAACAGCCAAGAGGGAGCGTTCTGAGCTTCCTGACTAA 1392 0.4454 MSVPMEEEEVVEVTLTTLQNQNQNPQTHENGVVPSSPPSPMLPEDKVLLPVEVCLKPSSTAPIHDVRSAVERMLEKRSLSYCDGPIPLPPDETFLADNVHKICVCDTDEGMHNDNVLLFWQVKPVVHVFQLSEEGPCEEISSDGQSSSFNEWILPAKEFDGMWESLIFESGLKQRLLHYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNLRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELMRTGILTSLQDCEVMLPSYASAKERLNTPDFNEAAVPMQLCKQLLETAAACEGMSGRSLRKLPFLAHAALANPFDCTPVKFLCTMIETAKRERSELPD* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0228 463 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 42 460 IPR044539 -
Dod09g0228 463 SMART AAA_5 198 350 IPR003593 -
Dod09g0228 463 MobiDBLite consensus disorder prediction 18 34 - -
Dod09g0228 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 362 IPR027417 -
Dod09g0228 463 Gene3D - 140 365 IPR027417 -
Dod09g0228 463 ProSitePatterns AAA-protein family signature. 320 339 IPR003960 GO:0005524|GO:0016887
Dod09g0228 463 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 316 330 IPR001270 GO:0005524
Dod09g0228 463 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 202 220 IPR001270 GO:0005524
Dod09g0228 463 CDD AAA 200 348 - -
Dod09g0228 463 Pfam ATPase family associated with various cellular activities (AAA) 202 347 IPR003959 GO:0005524|GO:0016887
Dod09g0228 463 MobiDBLite consensus disorder prediction 18 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0228 Dod-Chr9 3421328 3426488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0228 202 379 Calmodulin-binding Proteins AT3G56690 29.444 2.92e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0228 K22399 - gmx:100795009 766.918