Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0212 ATGTCTGTTGAGCTTGATAAAGGTTATCATGGACATGCATCATCTGGCAGCCATATTGGTGGTGATGCGCATGCCACAGAGACGAAAAAGAGGTTCGAGAGGAAGTATTCAAGAATAGATGATAACTATAATAGCTTGGAGCAGGTAACTGAGGCTCTGGCAGGTGCTGGACTAGAGTCTTCAAATCTCATTGTTGGTATTGATTTTACAAAGAGCAATGAGTGGACAGGGGGGAGGTCATTTCAAAGGAGATGCTTGCATCACATCGGTCACGAACAAAATCCATATGAACAAGCTATATCTATCATTGGGAAAACATTGTCTTCCTTTGATGAGGATAACCTAATTCCCTGTTTTGGATTTGGAGATGCATCAACGCATGACCAGGAAGTTTTTAGTTTCTATCCTGATGATAGATTTTGTCGTGGGTTTGAAGAAGTGTTAACTCGATATAGGGAATTGGTCCCTCAATTGAAGCTTGCAGGACCAACATCCTTTGCCCCAATCATAGAGATGGCAATCAGCATAGTTGAGCAAAGTGGAGGCCAGTACCATGTCTTGTTGATCATAGCTGATGGACAGGTGACAAGAAGCGTTGATACCGAGCGCGGGCAACTGAGTGCACAGGAAAAGAAAACTGTAGAGGCTATTGTGAGAGCTAGTGAATATCCCCTGTCAATCATTTTGGTTGGGGTTGGAGATGGGCCATGGGACATGATGAGAGAATTTGATGATAACATCCCTGCTCGAGCATTTGATAATTTCCAGTTTGTGAATTTCACAGAAATAATGTCAAAGCACATGGATCGATCTCGAAAGGAAACAGAGTTTGCACTTGCTGCCTTGATGGAAATACCCTCCCAGTACAAGGCAACACTAGAACTTAACATATTAGGTGCTCGCAGAGGGAAAGATATAGACAGGATTGCTCTACCACCACCTCAATACGGTGCTGGTGCACCATCTTACGACTCCCCAAAAGCTTCCCGTCAAAGCAGTTTCCATCCCAGTGCACCATCTCAAAGGCATGATGTTGCTCCAGACCCTCCTTCAAGTTCTACTTCGGATAGTCAGGTTTGTCCCATTTGCCTCACTAATCCCAAGGATATGGCTTTTGGTTGCGGGCATCAGACATGCTGTGAGTGCGGACCAGATCTTGAATTATGCCCCATATGCAGGAGTACTATTCAAACTAGAATAAAACTTTATTAA 1212 0.4389 MSVELDKGYHGHASSGSHIGGDAHATETKKRFERKYSRIDDNYNSLEQVTEALAGAGLESSNLIVGIDFTKSNEWTGGRSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDDRFCRGFEEVLTRYRELVPQLKLAGPTSFAPIIEMAISIVEQSGGQYHVLLIIADGQVTRSVDTERGQLSAQEKKTVEAIVRASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKHMDRSRKETEFALAALMEIPSQYKATLELNILGARRGKDIDRIALPPPQYGAGAPSYDSPKASRQSSFHPSAPSQRHDVAPDPPSSSTSDSQVCPICLTNPKDMAFGCGHQTCCECGPDLELCPICRSTIQTRIKLY* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0212 403 Coils Coil 29 49 - -
Dod09g0212 403 PANTHER COPINE FAMILY PROTEIN 1 24 403 - -
Dod09g0212 403 SMART VWA_4 60 263 IPR002035 -
Dod09g0212 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 403 IPR013083 -
Dod09g0212 403 SUPERFAMILY vWA-like 61 244 IPR036465 -
Dod09g0212 403 SUPERFAMILY RING/U-box 355 400 - -
Dod09g0212 403 Pfam Zinc finger, C3HC4 type (RING finger) 357 398 - -
Dod09g0212 403 Pfam Copine 85 298 IPR010734 -
Dod09g0212 403 MobiDBLite consensus disorder prediction 309 358 - -
Dod09g0212 403 PANTHER RING-FINGER PROTEIN 24 403 - -
Dod09g0212 403 CDD vWA_copine_like 39 289 IPR010734 -
Dod09g0212 403 MobiDBLite consensus disorder prediction 1 26 - -
Dod09g0212 403 MobiDBLite consensus disorder prediction 325 339 - -
Dod09g0212 403 ProSiteProfiles Zinc finger RING-type profile. 360 393 IPR001841 -
Dod09g0212 403 CDD RING-HC_RGLG_plant 359 403 IPR045317 GO:0061630|GO:0070534
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0212 Dod-Chr9 2897720 2901044 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0212 K16280 - gmx:100809850 674.47