Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0171 ATGGGCAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATCGGCCGTTTGGTGGCCAGAGTGGCTCTTCAGAGAGACGATGTTGAGCTCGTCGCCGTTAACGACCCTTTCATTACCACCGATTACATGACCTACATGTTCAAGTACGACAGTGTTCACGGACAGTGGAAGCACAACGAAGTTAGCGTGAAGGACAACAAGACCCTTCTCTTCGGCCAGAAGGCAGTCACTGTTTTCGGAATCAGGAACCCAGACGAGATCCCTTGGGGCGAGACCGGAGCCCAAGTCATCATTGAGTCCACTGGTGTCTTCACAGACAAGGACAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAGGTTATTATTTCAGCCCCTAGCAAAGATGCCCCCATGTTTGTTGTTGGTGTAAATGAACACGAGTACAAGCCAGAGCTTGATATTATTTCCAATGCTAGTTGCACAACCAACTGCCTTGCCCCACTTGCAAAGGTTATTAATGATAGGTTTGGCATTGTTGAGGGTCTGATGACCACTGTTCACTCCATCACTGCCACCCAGAAAACTGTTGATGGACCATCTAGCAAGGACTGGAGAGGTGGAAGGGCTGCTTCATTTAACATCATTCCCAGCAGCACTGGAGCTGCTAAGGCTGTTGGGAAAGTCCTTCCTGCTTTGAATGGAAAATTGACTGGAATGGCATTCCGTGTTCCCACTGTGGATGTCTCAGTTGTTGACCTCACTGTGAGACTGGCAAAGCCAGCCACCTATGACGATATCAAGAAGGCTATTAAGGAGGAGTCTGAAGGCAAGTTGAAGGGTATCCTTGGTTACACTGAAGATGATGTGGTCTCCTCCGATTTTGTTGGTGACAACAGGTCAAGCATTTTCGATGCCAAGGCAGGGATTGCTTTGAGCGAGACCTTCGCGAAGCTCGTTGCATGGTATGACAACGAAGTGGGTTACAGCACTCGCGTGGTTGACCTTGTTGCTCACATTGCTAAGAGTTTAGTTAATGGCTTTTTGAGTAGTGTTTCATGCACCTCCTTTCTTGATGGCCATGTTGAAGAAGGGATTTTCCCTAACTTTTGCTTACTCTTCAAATCCCTTCTCAATGGCCACCGCGGCGTTCAAATCCACTACCAAGCGAACCCCCGTCGGAGGAGCCTCCTTCCACCGAGGAATCCTTCGCCTCCACCAACCGCAGCTCCTCTTCCAGTGCACCACCGCCGGTCACGGAGCCTCAGCCGGTTCTCCCGTTCCCTCACTTCTCGCGACAACGACGAGAGCAACAGCAACGAGCTCTCTGCCGCCGGGAGAGGGAGGTTCGTCAACACCGTGAGGGGCTCCGGGTTCCCTGAGATCAGCCTCGACGATCTCGCCATCGAGTTCTTCGAGTCCGCGAACCGCGGTCGCTCAGGTTCTGGAAGGTTCGATTCCGAGGCCACTCCAGGCGGTGGCGCCGGCGGGACCGCGTCGCAGAGGCGAGGGAGGTCTGTCTCGAGGAAAGGCTCCGTAGGTGGCGATGATCGGAGGAGCAGTATTGGCGGTGGGGGAAGATCGGTTGCCGATGCGAATCCGAGGAGGAGGAGATCGGTTTCGGTGGTTCGGTACCAAATTAGCGATTCTGAGAGTGACCTGGATCATTCTCAGAATTCTAAAAGTCACGTGAATCTGAAAAATGCTGATATTGGGAACAAGCTGATGAACAAACCAGTTGCTTCAGATCAAAGACCAGGTCTGAAGAAGTCCCTAAGCCATAAGGATTTGAGATCATGTGATGGCTACTCTAGTCATTCTTCAGTCCTTACTGATGACGAAGGAGCAGGTGCTCACTTTAATAAAAATGGAAATGAGAAACTTCGAGCAGTTTATTCACAGAAGAAGGTGGCACCTCCTGACATGGATAATGGATTGCACAAAGCAATGCGGAAAGAAGCTATCGTGAAACCAAGGACCTACACATTATCCGCTGGTGATCGCTTACTGCCAAAAAATTCTGATGCTATTCAGGCTGTTTCTTCAGTCCGAAGGAATTATGAAAGCGAACTGGAACAGTCAGAGAAGCGAAAACAAGATTTATTAGCTGAAATAGAGTTTGAGGAGCAGCGAGGCAGAGAACTTTCGAAGATTGTTAATGAATTGGTTCCTGCTACAAAGAACAATTCTGTGCAAAAACCATCAAGAGCAAGGAAGAGAAGTAATGACAGAAGCAGAATGTCTATGCGCCTCACCGAAGAGGCTGAGAGGTATATTGAGGATTTTATTTCAAATGTTGAAGATACAGATATTTCGTCACTGGATGGAGAAAGAAGTGACACAAGCTCATCCATTGGAGGATTGATAAAGCCTGAAACATTTAATAGCCCACCAATTCCTAGATCTATTCCTGGTTTAATGGACGGGGTTACATTGCCATGGTTGCAATGGGAGACCAGTAATGATGCTTCTCACTCAAGCCTGAATAAGGCACAGATGACATTGACTCCAAAAAGTGCAAGTTCCACTCAGGAAATCATCAAAGCACAAGATCAAAGTAGCTATTCTGTCAGCAGTCGTGGAAGTTGGAGCCCTGTAGGCCTTCAGGAGTATATTGGAAAGGATGTATACAGTAAATTTGGAGAATCTTTTAGTTACCCGGGCAATTCATCCTCAGCTACATCTAAAGGATTGAGGTATGATATGGATGACTACCTCAAAGTTAAAAGCGACGAAGACATTATGATTGAGAGATGGAGGCAACAGCAGAGAATTAATTCAGGCAGTCTCCAGAAATTTAAATCAACTATGCAGATATCATATCGGGGTGCTTAG 2814 0.4797 MGKVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHNEVSVKDNKTLLFGQKAVTVFGIRNPDEIPWGETGAQVIIESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLAKPATYDDIKKAIKEESEGKLKGILGYTEDDVVSSDFVGDNRSSIFDAKAGIALSETFAKLVAWYDNEVGYSTRVVDLVAHIAKSLVNGFLSSVSCTSFLDGHVEEGIFPNFCLLFKSLLNGHRGVQIHYQANPRRRSLLPPRNPSPPPTAAPLPVHHRRSRSLSRFSRSLTSRDNDESNSNELSAAGRGRFVNTVRGSGFPEISLDDLAIEFFESANRGRSGSGRFDSEATPGGGAGGTASQRRGRSVSRKGSVGGDDRRSSIGGGGRSVADANPRRRRSVSVVRYQISDSESDLDHSQNSKSHVNLKNADIGNKLMNKPVASDQRPGLKKSLSHKDLRSCDGYSSHSSVLTDDEGAGAHFNKNGNEKLRAVYSQKKVAPPDMDNGLHKAMRKEAIVKPRTYTLSAGDRLLPKNSDAIQAVSSVRRNYESELEQSEKRKQDLLAEIEFEEQRGRELSKIVNELVPATKNNSVQKPSRARKRSNDRSRMSMRLTEEAERYIEDFISNVEDTDISSLDGERSDTSSSIGGLIKPETFNSPPIPRSIPGLMDGVTLPWLQWETSNDASHSSLNKAQMTLTPKSASSTQEIIKAQDQSSYSVSSRGSWSPVGLQEYIGKDVYSKFGESFSYPGNSSSATSKGLRYDMDDYLKVKSDEDIMIERWRQQQRINSGSLQKFKSTMQISYRGA* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0171 937 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 316 IPR020829 GO:0016620
Dod09g0171 937 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 336 IPR020831 GO:0016620
Dod09g0171 937 MobiDBLite consensus disorder prediction 417 435 - -
Dod09g0171 937 MobiDBLite consensus disorder prediction 391 405 - -
Dod09g0171 937 Gene3D - 4 331 - -
Dod09g0171 937 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 IPR020831 GO:0016620
Dod09g0171 937 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 IPR020831 GO:0016620
Dod09g0171 937 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 IPR020831 GO:0016620
Dod09g0171 937 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 113 126 IPR020831 GO:0016620
Dod09g0171 937 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 IPR020831 GO:0016620
Dod09g0171 937 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 5 328 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Dod09g0171 937 MobiDBLite consensus disorder prediction 764 792 - -
Dod09g0171 937 Coils Coil 670 704 - -
Dod09g0171 937 MobiDBLite consensus disorder prediction 764 783 - -
Dod09g0171 937 MobiDBLite consensus disorder prediction 471 602 - -
Dod09g0171 937 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 IPR020830 GO:0016620
Dod09g0171 937 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 107 IPR020828 GO:0051287
Dod09g0171 937 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 153 316 - -
Dod09g0171 937 MobiDBLite consensus disorder prediction 718 742 - -
Dod09g0171 937 MobiDBLite consensus disorder prediction 386 435 - -
Dod09g0171 937 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 336 - -
Dod09g0171 937 SMART gp_dh_n_7 4 154 IPR020828 GO:0051287
Dod09g0171 937 Gene3D Dihydrodipicolinate Reductase; domain 2 153 318 - -
Dod09g0171 937 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 170 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0171 Dod-Chr9 2324109 2336282 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0171 K00134 - gmx:100805104 677.937