Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0113 ATGAACAAGAGGAAAAGAGCAGAAGAAGAAGGCGAGAAGAGCATGGATATCGTGTGGCAGACCCCAGCGAATCCCCCGCACCCGCACGACTACATCTTCCGAAACCGAATTCGATTCGTTAGACCATACTACTTCGAATTTATAGCTCATGTTAAAAATCGATGGGCCGGGAAAACCATTGTAGATTTGTTCGCTGAGGAGTTTAAGGGTCGACCTTATGAATATTATGTCAGTGCAGTGAAATGTGGAAGGATTCAAGTTGACGGTGAGATGGTACCAGTTTCATACATAGTTAAACCATCTCAAAAGATAAGCCATTTCTTACACAGGCATGAACCGCCTGTGATGGCTTGCGATGTTCCAATTCTTCAAAAAGAAGCTGATGTACTGACTGTTTGTAAGCCGGCATCTGTGCCTGTGCATCCATGTGGTCAATATCGTAAGAATACTGTTGTTGGCATCCTTCAAGCAGAGCATGGGCTGGCACCTTTATTTCCGGTTCATCGACTAGATCGCCTTGTCTCAGGGCTTCTCATTTTGGCCAGAAATGCTTCAAAAGCTGATATTTTTAGGCAGCAGATTGAAGCTGGCTTAGTCCAGAAACAGTACATAGCAAAAGTAGTTGGAGAATTTCCTGAGGATGAGCTAATTGTTGATGCCAATATAGACTACAATGCTCGAGAAGGAAGGAGCACAGCAGAGGTCAGAGACTCTGCAAAGGGGAAGGCTGCCTCCACAAAATTTACTCGGATTAGTTCCAATGGTATTCAAAGTATTGTTTTATGTGAACCAATCACTGGTCGCACCCATCAGATTCGTGTTCATTTACAGTGTTCAGGACATCCAATAGCCAATGACATGCTGTACATATCAGAACAAACTGTTGATCGATCAAGTAGAGGTTCAAGTGCCAATAGATCAGCTCGCATATCTGATGCTTCTCTATCATCGAGTTTTGATGAAAAAGTGGTCAATGAATGTGAAGAAAAATCCAATGAGGATTTTAGCATTGATCCCATGTGTACGAACTGTCCAAATTTGGCACCGAAAGGATATGATGGCGATGAAGAAGGTCTATGGCTACATTGTATTCGGTATTCTGGACCCGGATGGGCGTATGAATGCCCATACCCTGATTGGGCCAAACTTAGTTAG 1155 0.4346 MNKRKRAEEEGEKSMDIVWQTPANPPHPHDYIFRNRIRFVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYEYYVSAVKCGRIQVDGEMVPVSYIVKPSQKISHFLHRHEPPVMACDVPILQKEADVLTVCKPASVPVHPCGQYRKNTVVGILQAEHGLAPLFPVHRLDRLVSGLLILARNASKADIFRQQIEAGLVQKQYIAKVVGEFPEDELIVDANIDYNAREGRSTAEVRDSAKGKAASTKFTRISSNGIQSIVLCEPITGRTHQIRVHLQCSGHPIANDMLYISEQTVDRSSRGSSANRSARISDASLSSSFDEKVVNECEEKSNEDFSIDPMCTNCPNLAPKGYDGDEEGLWLHCIRYSGPGWAYECPYPDWAKLS* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0113 384 CDD PseudoU_synth_ScRIB2 105 382 - -
Dod09g0113 384 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 54 299 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dod09g0113 384 ProSitePatterns Rlu family of pseudouridine synthase signature. 167 181 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dod09g0113 384 Gene3D Pseudouridine synthase 113 347 - -
Dod09g0113 384 Pfam RNA pseudouridylate synthase 129 277 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dod09g0113 384 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 16 383 - -
Dod09g0113 384 SUPERFAMILY Pseudouridine synthase 112 381 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dod09g0113 384 PANTHER PSEUDOURIDINE SYNTHASE 16 383 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0113 K15454 - gmx:100811500 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0113 09 1654237 1665400 Dod09g0113 09 1654237 1665400 ECH