Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0016 ATGTGGCACCGGAGCAGCTGCTACCTCCGTTTCTCGAAATTCTACCGGCGTTCGGGGTTAGGGCTCTCAGGAAGGTCGTTCTCGTCCGATCGAAGCGGGAAGAGGTTCGCGGCGCTGTGGGGGAACGGCGATTACGGCAGATTGGGCCTCGGCACCTTGGATTCTCACTGGACGCCCGCTATCTGCCCTGCGCTCCGCCACCAATCACTCAAATCCATTGCTTGCGGCGGTGCTCACACGCTCTTCCTAACAGACGATGGGTGCGTTTACGCCACTGGTCTAAATGATTTTGGACAACTTGGTATATCAGAGAGTAGTAAACGGTACTTGGTGGAGCCAGTTTGGGTTTTTGGAGATGCAAAGCAAATTGTGCAGATCTCTGCTGGTTATAATCATTCCTGTGCGATAACAGTTGATGGAGAACTATATATGTGGGGAAAGAATACAAGTGGACAGCTTGGACTTGGAAAAAAGGCTCCAAACATAGTTCCTTTGCCAACTAAAGTGGAATATTTGGATGGAATCAGCATTAAAATGGCAGCTCTTGGGTCAGAACACTCAATGGCTATAAGTGATGGAGGAGAGGCCCTTAGTTGGGGGATGGGAGGGTCTGGTAGACTTGGTCATGGTCATGAGTCCAGCGTTCTAGGATTCTTCAAAAGTTATAGTGAGTATACTCCTAGGCTTATAAAGGATCTTGAGGGAGTCAAGGTTAAATATGTAGCTGCTGGGTTGCTAAATTCGGCTTGTACTGATGAAAATGGCTCTGTTTATATATTTGGTGAAAGAGGGATTGACAAATTGCGCTTGAAAGCAATGAGTAATGCGACAACACCATCCTTAATTAGTGAACTTCCATACTCACAAGAAGTTGCTTGCGGTGGCTATCATACCTGTGTCCTGACAAATTCTGGAGAGCTTTATACTTGGGGGTCAAATGAAAATGGCTGCCTTGGCATCGGCTCCTCAGATGCCATTCATGTACCTGAAAGGGTTCAAGGGCCATTCTTGAAGTCTTCTGTTAGCCAGGTTTCTTGTGGTTGGAAGCATACAGCAGCCATTTCTGAAGGAAGAGTCTTCACATGGGGCTGGGGAGGTTCCAATGGGACTTTCTCTGAAGTTGGACATTCTTCGGGTGGACAATTGGGTCAAGGAAGTGATGTGGACTATATAAATCCTAGTAGAGTTTGTTTTGGAGAAGAAGTGAAAGCATTGCAAGTTTCATGTGGGTTCAATCATACAGGAAAACAGATGCACATGTATATAGGCAAATAA 1275 0.4651 MWHRSSCYLRFSKFYRRSGLGLSGRSFSSDRSGKRFAALWGNGDYGRLGLGTLDSHWTPAICPALRHQSLKSIACGGAHTLFLTDDGCVYATGLNDFGQLGISESSKRYLVEPVWVFGDAKQIVQISAGYNHSCAITVDGELYMWGKNTSGQLGLGKKAPNIVPLPTKVEYLDGISIKMAALGSEHSMAISDGGEALSWGMGGSGRLGHGHESSVLGFFKSYSEYTPRLIKDLEGVKVKYVAAGLLNSACTDENGSVYIFGERGIDKLRLKAMSNATTPSLISELPYSQEVACGGYHTCVLTNSGELYTWGSNENGCLGIGSSDAIHVPERVQGPFLKSSVSQVSCGWKHTAAISEGRVFTWGWGGSNGTFSEVGHSSGGQLGQGSDVDYINPSRVCFGEEVKALQVSCGFNHTGKQMHMYIGK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0016 424 Gene3D - 162 419 IPR009091 -
Dod09g0016 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 194 254 IPR000408 -
Dod09g0016 424 Gene3D - 24 161 IPR009091 -
Dod09g0016 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 86 IPR000408 -
Dod09g0016 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 357 420 IPR000408 -
Dod09g0016 424 PANTHER OS11G0545800 PROTEIN 31 417 - -
Dod09g0016 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 87 139 IPR000408 -
Dod09g0016 424 PRINTS Chromosome condensation regulator RCC1 signature 89 105 IPR000408 -
Dod09g0016 424 PRINTS Chromosome condensation regulator RCC1 signature 70 83 IPR000408 -
Dod09g0016 424 PRINTS Chromosome condensation regulator RCC1 signature 352 373 IPR000408 -
Dod09g0016 424 PRINTS Chromosome condensation regulator RCC1 signature 180 196 IPR000408 -
Dod09g0016 424 PRINTS Chromosome condensation regulator RCC1 signature 36 52 IPR000408 -
Dod09g0016 424 PRINTS Chromosome condensation regulator RCC1 signature 196 210 IPR000408 -
Dod09g0016 424 PRINTS Chromosome condensation regulator RCC1 signature 294 312 IPR000408 -
Dod09g0016 424 PRINTS Chromosome condensation regulator RCC1 signature 140 156 IPR000408 -
Dod09g0016 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 305 357 IPR000408 -
Dod09g0016 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 140 193 IPR000408 -
Dod09g0016 424 SUPERFAMILY RCC1/BLIP-II 39 414 IPR009091 -
Dod09g0016 424 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 31 417 - -
Dod09g0016 424 Pfam Regulator of chromosome condensation (RCC1) repeat 86 136 IPR000408 -
Dod09g0016 424 Pfam Regulator of chromosome condensation (RCC1) repeat 304 354 IPR000408 -
Dod09g0016 424 Pfam Regulator of chromosome condensation (RCC1) repeat 139 190 IPR000408 -
Dod09g0016 424 Pfam Regulator of chromosome condensation (RCC1) repeat 194 245 IPR000408 -
Dod09g0016 424 Pfam Regulator of chromosome condensation (RCC1) repeat 40 83 IPR000408 -
Dod09g0016 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 255 304 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0016 Dod-Chr9 334154 341350 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0016 - - gmx:100811823 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0016 09 334154 341350 Dod09g0016 09 334154 341350 ECH