Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2293 ATGCAGCAAGGAGACTACACCTCCGCTCCATACTACCAATTCCCTCACCTCCCGAACCCGAACCCGAACCCGAACCCAAACCCAAATCCAAATCCCAACCATAACCCTTCCGATCCAAACCCAACCCCTTACGCCTCCGCACCTCCCTTCTCCTCCGATAATTACACCCCTTACTACCCTCCCTACCCGCAAAATCCCGATCCTACCGCTGCCCCTGCCCCTCCTTCCCCCACTGCACCTTCCTACACCAGTAATTTCCCCTCCTTCAATTCTCCACCGTTCGATTCTCACCTCTCATACCAACAACCACCACCACCACCACCACCGCCACCTCAGCAACCGCAACAACAACAACCCCAACCTTATTATCCACCGTACGATCAGCATCAAGCGGCTCCAATCTACGCTCCTCCTCCACCACCCTCCGCTAACCCACCGTACACCGCACCGTATAGCCACGCTGGATCTACGGTCCCTCCAGCTCCCGCATACGATCCACACTATGACAACACCCCCGCGAAGTTCGATCACGCTGGCGCGTACTTCGACGACGGTTATAACGGTTGTAACAGCTTTAACCGTAGCCGTTCTGATTCTTACGGCAACCGCCACGACGACAGTTATAACAGCTTTAACCGTAACCGTTCCGATGATGTTTACGGTGACGGGGTTTATGCTTACGAAGGCGGGAAGGTGGAACCGTACGGGGCTCGTGGAACCGCGCCGAAATCGTCGACTTGGTCAGGTTTCGATGATTACGGTAGAGCCATCAGTTTCCCGAAGGAAGGTTCCTCCGGCGGGAGCAAGATCGTGAAGGCGGTGCCGAAGGTGGAGGCGCGTGAGGATCCAGGGAGCGGGGTGCAGAAGTTTCGGGTGAAGCTTTTGGCAGAGAGTGGTGGCCAGGGCACCATGGATGTTCTGTGTCAGATTGCTTTGGATGGAATTCGAATGCTGGATCCAAATACCAGTCGAACATTGAGAATATATCCTCTTGAGAACATAACAAGATGTGAAAAATTTGATTCATCTACCCTTGCATTCTGGTCAAAAAGCCCAGTGGACATTGAGCCAAGACGAATCAGATTGCAATCCAATAGTTACACTACCAACACACTTTTGGATACTGTGACCGCTGCTACTATACAGGTCCCAGATGAAGCAGTCTCGAAGTGTACAGCATGTGGGACTGATTTTGGGGCTTTTGTTCGCAGGCATCACTGTAGGAATTGTGGAGATATTTTCTGTGACAAATGTACTCATGGTAGAATTGCTCTAACTGCTGATGAGAATGCTCAGCCAGTACGAGTTTGTGACCGATGCATGGCAGAAGTGACCCAGAGGCTGAGTAATGCTAAAGAATCAGCAAGTAAACCTGTATTGCAAAGTCATGAGGATCTTGCTAGGAAACTTCAGGAGGAGCTGGAGAGGAATCGAAAGACATCAGGTTCGAAGTCTGAAGGATCTGGAAGACGGATGAAGGAAGTTGCATGTCCTATTTGCACTGTTCATCTGCAGGTCCAGGTACCTACCTCAGGTTCGGAGACCATTGAGTGTGGAGTTTGCCAGCACCCATTTCTTGTGAGTGCTCACTGA 1593 0.5141 MQQGDYTSAPYYQFPHLPNPNPNPNPNPNPNPNHNPSDPNPTPYASAPPFSSDNYTPYYPPYPQNPDPTAAPAPPSPTAPSYTSNFPSFNSPPFDSHLSYQQPPPPPPPPPQQPQQQQPQPYYPPYDQHQAAPIYAPPPPPSANPPYTAPYSHAGSTVPPAPAYDPHYDNTPAKFDHAGAYFDDGYNGCNSFNRSRSDSYGNRHDDSYNSFNRNRSDDVYGDGVYAYEGGKVEPYGARGTAPKSSTWSGFDDYGRAISFPKEGSSGGSKIVKAVPKVEAREDPGSGVQKFRVKLLAESGGQGTMDVLCQIALDGIRMLDPNTSRTLRIYPLENITRCEKFDSSTLAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQVPDEAVSKCTACGTDFGAFVRRHHCRNCGDIFCDKCTHGRIALTADENAQPVRVCDRCMAEVTQRLSNAKESASKPVLQSHEDLARKLQEELERNRKTSGSKSEGSGRRMKEVACPICTVHLQVQVPTSGSETIECGVCQHPFLVSAH* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2293 530 MobiDBLite consensus disorder prediction 82 97 - -
Dod08g2293 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 450 IPR013083 -
Dod08g2293 530 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 385 445 IPR017455 -
Dod08g2293 530 MobiDBLite consensus disorder prediction 54 81 - -
Dod08g2293 530 MobiDBLite consensus disorder prediction 15 46 - -
Dod08g2293 530 PANTHER PROTEIN FREE1 383 530 IPR045893 GO:0036258|GO:0043130
Dod08g2293 530 MobiDBLite consensus disorder prediction 98 121 - -
Dod08g2293 530 MobiDBLite consensus disorder prediction 131 147 - -
Dod08g2293 530 SMART fyve_4 377 446 IPR000306 GO:0046872
Dod08g2293 530 MobiDBLite consensus disorder prediction 1 173 - -
Dod08g2293 530 PANTHER PROTEIN FREE1 383 530 - -
Dod08g2293 530 PANTHER PROTEIN FREE1 1 383 IPR045893 GO:0036258|GO:0043130
Dod08g2293 530 PANTHER PROTEIN FREE1 1 383 - -
Dod08g2293 530 CDD PTB 271 337 - -
Dod08g2293 530 SUPERFAMILY FYVE/PHD zinc finger 382 451 IPR011011 -
Dod08g2293 530 Coils Coil 460 480 - -
Dod08g2293 530 Pfam FYVE zinc finger 383 445 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2293 Dod-Chr8 50971860 50978235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2293 383 458 EF-hand Containing Proteins AT3G14270 34.483 9.20e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g2293 - - gmx:100794840 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2293 08 50971860 50978235 Dod08g2293 08 50971860 50978235 ECH