Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2249 ATGACCACGTCACTCCTCCTCCCCACCATCATTCTCTTCGCCACCGCCGCCGCTGGCCAATGGCAGCTCCTCCAAAAAAGCATCGGCATCGTAGCCATGCACATGCAACTCCTTCAAAACGACCGCGTTTTGATCTACGACCGCACGGACTTCGGTCTTTCCAACCTCTCCCTCCCAAACCACCTCTGCCGCCACGACCCCAATGAAATGGCAGTCAAAACCGACTGCACCGCACACTCCATCGAATACGACGTTGTTGCCAACACATTCCGTGCACTCTTCATCCAATCCGACGTGTGGTGCTCCTCCGCCTCCGTCTCCGCCAACGGCACCGTCGTCCAGACCGGAGGCTTCAACGACGGCGACCGCACCGTCCGCACCTTCTCCTCAGGGGGCGAATGGACCGAGTTTCCCGGCCAACTCGCCGCCCGGAGATGGTACGCCACCAACCTCAAGCTCCCAGACGGCCGCCAAATCATCATTGGCGGCCGTCGTCAATTCAACTTCGAGTTCCACCCGAAAAGCACACTTGCAACGTCAGCAAAACATGTTTATAGTTTGCCGTTTCTCGTTGAGACCAACGAGAACGGCGTGGAGAACAACCTCTATCCCTTTGTTTTCCTCAACGTGGATGGCAACCTTTTTATCTTCGCGAACAATAGAGCTATATTGCTCAATTATGCTAACAATGCTGTCGTCAAGAAATACCCGGATATTCCGGGTGGTGACCCGAGGTGTTACCCGAGTACTGGATCCGCAGTGATGTTACCATTGAGAAAATCACAAGCCCAATTCATAGAAGCTGAGGTTCTGGTATGTGGTGGAGCTCCGAGAGGCTCTTTCCAACAAGCAAAAATGGGTCGGTTTCTCGGAGCTTTGAATACTTGCGGCAGGATCAAAATCAATGACCCGAACCCGCAATGGGTCATGGAGACAATGCCTAAAGCTAGGGTCATGAGTGACATGGTAATGCTCCCAAACTGCAACGTTTTGATTATAAACGGGGCGGGATCGGGAACTGCAGGTTGGGAATACGGGCGTGACCCGATTCTCAACCCGTTTCTTTATAAACCCGACAACCCAATCGGGTCGAGATTTGAGATCCAAGAAGCTTCTAGTATTCCCCGAATGTACCATTCCACTGCTGTTTTGCTCCGTGATGGGAGGGTGCTAGTAGCTGGGAGCAACCCTCACGTGTATTACAATTTCACCAACGTGTTGTACCCTACGGAACTGACTCTTCAAGCTTTTTCGCCTTCGTATTTGGAGCATGTTTTCGATGATTTGCATCCGAGGATTGTGTCGCAGTTTCAGACCGCAGTGGTGTACGGTCAGGTGTTGAAGGTGCAGTTTGTTCTGACGGGTGCTTTGTTGGATAAGGATTTGGTGCTGGTGACGATGTTGGCGCCGCCATTTAACACGCACTCGTTCTCCATGAATCAGAGGTTGTTGGTGTTGGAGGCGAGCAAGGTGGTGAGTGGAGTGGGGACATCTACGTATGAAGTTGAGGTCGCCATGCCTGGTTCCCCTGTTCTTGCACCGCCCGGTTTTTATCTCATGTTTGTGGTCCACCAAGAAATTCCAAGCGAGGGTGTTTGGGTTCAAATACTTTGA 1614 0.5211 MTTSLLLPTIILFATAAAGQWQLLQKSIGIVAMHMQLLQNDRVLIYDRTDFGLSNLSLPNHLCRHDPNEMAVKTDCTAHSIEYDVVANTFRALFIQSDVWCSSASVSANGTVVQTGGFNDGDRTVRTFSSGGEWTEFPGQLAARRWYATNLKLPDGRQIIIGGRRQFNFEFHPKSTLATSAKHVYSLPFLVETNENGVENNLYPFVFLNVDGNLFIFANNRAILLNYANNAVVKKYPDIPGGDPRCYPSTGSAVMLPLRKSQAQFIEAEVLVCGGAPRGSFQQAKMGRFLGALNTCGRIKINDPNPQWVMETMPKARVMSDMVMLPNCNVLIINGAGSGTAGWEYGRDPILNPFLYKPDNPIGSRFEIQEASSIPRMYHSTAVLLRDGRVLVAGSNPHVYYNFTNVLYPTELTLQAFSPSYLEHVFDDLHPRIVSQFQTAVVYGQVLKVQFVLTGALLDKDLVLVTMLAPPFNTHSFSMNQRLLVLEASKVVSGVGTSTYEVEVAMPGSPVLAPPGFYLMFVVHQEIPSEGVWVQIL* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2249 537 Gene3D Immunoglobulins 430 537 IPR013783 -
Dod08g2249 537 Gene3D - 15 425 IPR037293 -
Dod08g2249 537 Pfam Galactose oxidase-like, Early set domain 431 536 IPR015202 -
Dod08g2249 537 CDD E_set_GO_C 426 536 IPR015202 -
Dod08g2249 537 Pfam Glyoxal oxidase N-terminus 33 275 IPR009880 -
Dod08g2249 537 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 9 536 - -
Dod08g2249 537 PANTHER SECRETED PROTEIN-RELATED 9 536 - -
Dod08g2249 537 SUPERFAMILY Galactose oxidase, central domain 80 423 IPR011043 -
Dod08g2249 537 SUPERFAMILY E set domains 426 536 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2249 Dod-Chr8 50303599 50305407 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g2249 - - vra:106764091 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2249 08 50303599 50305407 Dod08g2249 08 50303599 50305407 ECH