Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2215 ATGATCTCTCAGTTCTTCGTGCTTTCTCAGAGAGGCGACAACATCGTCTTCCGTGACTATCGTAGTGAAGTGCAGAAAGGAAGCGCTGAGACATTCTTCAGAAAAGTGAATTTCTGGAAAGAGGACTGTGAAGGCGATGCTCCACCTGTATTTAATGTGGATGGTGTGAACTACTTCCACGTGAAGGTTGCTGGCTTGTTGTTTGTTGCCACGAACAGGGTCAATGTCTCCCCTTCTCTTGTCTTGGAGCTCTTGCAACGGATTGCGCGCGTCATCAAAGATTACCTTGGTGTTCTTAACGAAGATTCATTGCGGAAGAACTTTGTGCTCATTTATGAATTGCTGGATGAAGTCATTGATTTTGGTTATGCCCAAACAACATCCACAGAGGTTCTGAAGTCGTATGTTTTCAATGAGCCAATTATGATTGATTCTGCAGTGATTCCTCCCCTTGGTCCTGCATCCATTTTTGTGCAAGGGACCAAAAGAATGCCAGGTACAGCTATTACGAAATCCGTTGTTGCTAATGAACCAGGTGGTAGAAAGAGGGATGAGATTTTTGTTGATGTAATTGAGAAAATAAGTGTCACATTCAACTCTAGTGGATTTATACTAACTAGTGAGATCGATGGCACTATTCAAATGAAGAGTTACCTTACGGGTAACCCAGAGATTCGACTTGCTCTCAATGATGACCTGAGTATAGGAACTAGTGATTATACAAGTTCTGGTGCAGTGATTCTTGATGATTGTAACTTCCATGAGTCTGTACACCTTGATAGTTTTGATGTTGACCGAACTTTGTCGTTGGTGCCACCGGATGGGGAATTTCCAGTCATGAACTATCGCATGACTCAACCATTTAAGCCTCCTTTTCGTATTAATGCATTGCTTGAAGAAACTGGACCCCTTAAGGCCGAAGTGATCATAAAAGTACGTGCTGAGTTCAACTCAAGCATCAGTGCTAACACAGTTCTTGTACAGATGCCGCTGCCGTCATTTACCAATCGTGTTAATTTTGAATTGGAACCTGGATCAGTGGGAAACACAACTGACTTCAAGGAATCAAATAAGAAACTAGAGTGGGGCATAAGAAAGGTTGTTGGTGGATCTGAACATACTTTGCGAGCAAAACTGACATTTTCACAGGAGTTACATGGTAAAATGTTCTGTTTGGGCTGA 1182 0.4239 MISQFFVLSQRGDNIVFRDYRSEVQKGSAETFFRKVNFWKEDCEGDAPPVFNVDGVNYFHVKVAGLLFVATNRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLIYELLDEVIDFGYAQTTSTEVLKSYVFNEPIMIDSAVIPPLGPASIFVQGTKRMPGTAITKSVVANEPGGRKRDEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNDDLSIGTSDYTSSGAVILDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQPFKPPFRINALLEETGPLKAEVIIKVRAEFNSSISANTVLVQMPLPSFTNRVNFELEPGSVGNTTDFKESNKKLEWGIRKVVGGSEHTLRAKLTFSQELHGKMFCLG* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2215 393 Gene3D Mu homology domain, subdomain B 182 289 - -
Dod08g2215 393 CDD AP-4_Mu4_Cterm 178 384 - -
Dod08g2215 393 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dod08g2215 393 PRINTS Clathrin coat assembly protein signature 248 275 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dod08g2215 393 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dod08g2215 393 PRINTS Clathrin coat assembly protein signature 361 372 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dod08g2215 393 Gene3D Mu homology domain, subdomain B 290 383 - -
Dod08g2215 393 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 389 - -
Dod08g2215 393 CDD AP4_Mu_N 3 143 - -
Dod08g2215 393 PIRSF AP_complex_mu 1 389 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dod08g2215 393 Pfam Clathrin adaptor complex small chain 1 132 IPR022775 -
Dod08g2215 393 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Dod08g2215 393 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 182 387 IPR036168 -
Dod08g2215 393 Gene3D - 1 142 - -
Dod08g2215 393 ProSiteProfiles Mu homology domain (MHD) profile. 183 393 IPR028565 -
Dod08g2215 393 PANTHER AP COMPLEX SUBUNIT MU 2 389 - -
Dod08g2215 393 Pfam Adaptor complexes medium subunit family 182 386 IPR028565 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2215 Dod-Chr8 49865205 49871234 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g2215 K12402 - gmx:100800985 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2215 08 49865205 49871234 Dod08g2215 08 49865205 49871234 ECH