LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod08g2192	ATGAGTTGGAGAGCTTTACTCTCCAGACACAAAAAACTCACCAAACTCACTCCAATTTTTCAATTTTCCCAAAATGCCCCTACCCTCCCCACACTCCAACAACCACTTCCCATTCCCCTGTTCACCAGAAAAAGGCACCTTCATAATCACTCCCACCGGGTCACCCAACTCAGTAACTCGCTCATACCTTCAAAACCCGACACAAGCGACGAAGAAGATTCCGACGACACGATGAACGAGTTCTTGTCCCGATTCGTGTGGGTGATGCGGAAGAAGGTCCGAGAATCGTACCCTGATTCTGACAAGGGCACGGTCGACGCAATGCTCGTGGTGATCGTGGAACGCGTCGTTTCGGAGCTCGAGAAGGGCGGGTTCGTCGTTGGAACGGCGCCGTATTCGTCTGGTTCGGATGATTTCAGCGGGGATCTGTGGAGGACGGTGTGGGAGGTGAGCCAGACGGTGATCGAAGGGATGAACAAGGAGAGGAAGAAGGAGAAGATGAAGGGTTTCTTGCAGTGCGAGGAGGTCAAGCAAATGTGCAGGTTTGCTGGCGAGGTTGGGATAAGAGGGGACATGCTCAGGGAGCTGAGATTCAAGTGGGCACGAGAGAAGATGGAAGAGCATGAGTTCTATGAGGGTTTAGAGCGTCTAAGGAAAGAAGAAGAAGCTGAAGAAAATGATGAAGAAAAGCAACGGGGGACAGAACATGGGGATGCTGGTGTTGGTGTTAGTGAGGAGGGGGATAAGGTTGTTGGGCTTCCCAAGAGGAAGGGGAAGATAAGGTACAGAATTTATGGGCTTGATTTGTCTGATCCCAAGTGGGCGACTGCGGCTGATAGGATCCATGAGGCGGGGCAGGTCATGTGGCCAAAGGAGGTGAAGCCGATAACCGGGAAGTGTAAGGTTGTTACGGAGCGGATTTTGGGGTTGAAGGAGGAGGATAGTGATGAGTTGTTGGGGCTTTCGGCTGAGTGGGTGGAGCTTCTGCAACCCAACAGGGTTGATTGGATGAGCTTGCTTGACAGATTGAAACAGCAGAATCCTCCTTTGTACTTCAAGGTGGCAGAAATTGTATTGACTGAAGATTCTTTCCAAACAAGTATATCTGACTACTCCAGGCTTATTGATATCTATGCTAAAGAGAATAAGTTTGATGATGCTGAGAGGATCCTTATGAAGATGAACAAAAAAGGAATGCTACCAGATGCTTCAGCAGCCAGTGCATTGGTCCACATGTACAGCAAGGTAGGAAATCTTGATCGCGCAAAAGAAGCATTTGAAATCTTGAGGAGCCAGGGCTTCCAACCAGACATAAAAGTCTACACTGCAATGATCATGGCCCATGTAAATGCCGGTGATCCTAAGAAAGGTGAGGCTCTGATGAGGGAGATGGAGATGAGAGATATTAAACCCACAAAGGAGATATACATGGCATTGCTGCAATCTTTTTCTCAATGTGCTGATGTTGCTGGAGCCGGACGAATTTCAACAACTATGCAGTTTGCAGGATTCCCGCAGACTATGGAGACATGCACATTACTTGTTGAGGCACATGCAAATGCAGGTGAACCAGATCAGGCAAGAAGCAACTTTGACTACATGGCAAACTTTGGGCATAAGCCTGATGATAGGTGCACTGCTAGCATGATTGCGGCCTATGAGAAGAAAAACTTATTGGACAAGGCACTAAACCTTCTTTTGGACCTAGAGAAGGATGGGTTTGAGCCTGGGGTTGCGACTAACTCTGTTCTTGTGGATTGGTTGGGTAGGTTGCAGCTCGTTGACGAGGCTGAACAGATTCTAGGCAAAATCGCTTTGCAAGGCGAGGCTCCTCCTTTTAAGGTTCAAGTGAGTCTTTGCGATATGTATGCGAGGGCTGGAATCGAGAAAAAGGCCCTTCAAACTCTGGGCCTTCTGGAAGCTAGGAAGGATGAATTGGGACATGCTGATTTTGAGAGAATCATACAAAGCCTTATTGCTGGTGGGTTTGAGCAGGATGCAAGAAGAATGTGTGGGGTCATGGAGGCACAGGGTTTCACTCCATCAGAACCCCTTAAGATGGCACTTATGAAACCTAGCCGCAAATCACCAAGTATGAGATAG	2103	0.4831	MSWRALLSRHKKLTKLTPIFQFSQNAPTLPTLQQPLPIPLFTRKRHLHNHSHRVTQLSNSLIPSKPDTSDEEDSDDTMNEFLSRFVWVMRKKVRESYPDSDKGTVDAMLVVIVERVVSELEKGGFVVGTAPYSSGSDDFSGDLWRTVWEVSQTVIEGMNKERKKEKMKGFLQCEEVKQMCRFAGEVGIRGDMLRELRFKWAREKMEEHEFYEGLERLRKEEEAEENDEEKQRGTEHGDAGVGVSEEGDKVVGLPKRKGKIRYRIYGLDLSDPKWATAADRIHEAGQVMWPKEVKPITGKCKVVTERILGLKEEDSDELLGLSAEWVELLQPNRVDWMSLLDRLKQQNPPLYFKVAEIVLTEDSFQTSISDYSRLIDIYAKENKFDDAERILMKMNKKGMLPDASAASALVHMYSKVGNLDRAKEAFEILRSQGFQPDIKVYTAMIMAHVNAGDPKKGEALMREMEMRDIKPTKEIYMALLQSFSQCADVAGAGRISTTMQFAGFPQTMETCTLLVEAHANAGEPDQARSNFDYMANFGHKPDDRCTASMIAAYEKKNLLDKALNLLLDLEKDGFEPGVATNSVLVDWLGRLQLVDEAEQILGKIALQGEAPPFKVQVSLCDMYARAGIEKKALQTLGLLEARKDELGHADFERIIQSLIAGGFEQDARRMCGVMEAQGFTPSEPLKMALMKPSRKSPSMR*	701

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod08g2192	700	Pfam	Pentatricopeptide repeat domain	361	413	IPR002885	-
	Dod08g2192	700	Coils	Coil	211	234	-	-
	Dod08g2192	700	MobiDBLite	consensus disorder prediction	216	246	-	-
	Dod08g2192	700	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	507	541	IPR002885	-
	Dod08g2192	700	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	542	576	IPR002885	-
	Dod08g2192	700	PANTHER	PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL	33	691	-	-
	Dod08g2192	700	MobiDBLite	consensus disorder prediction	55	76	-	-
	Dod08g2192	700	Gene3D	Tetratricopeptide repeat domain	468	696	IPR011990	GO:0005515
	Dod08g2192	700	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	437	471	IPR002885	-
	Dod08g2192	700	Pfam	Pentacotripeptide-repeat region of PRORP	419	527	IPR033443	-
	Dod08g2192	700	Gene3D	Tetratricopeptide repeat domain	311	467	IPR011990	GO:0005515
	Dod08g2192	700	TIGRFAM	PPR: pentatricopeptide repeat domain	440	472	IPR002885	-
	Dod08g2192	700	TIGRFAM	PPR: pentatricopeptide repeat domain	407	438	IPR002885	-
	Dod08g2192	700	TIGRFAM	PPR: pentatricopeptide repeat domain	371	403	IPR002885	-
	Dod08g2192	700	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	402	436	IPR002885	-
	Dod08g2192	700	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	367	401	IPR002885	-
	Dod08g2192	700	PANTHER	OS07G0661900 PROTEIN	33	691	IPR044657	-
	Dod08g2192	700	Pfam	PPR repeat	548	574	IPR002885	-
	Dod08g2192	700	SUPERFAMILY	TPR-like	297	546	IPR011990	GO:0005515

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod08g2192	357	699	Glycosyltransferase	AT1G05670	19.242	5.95e-12	67.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod08g2192	-		-	lang:109358423	882.863

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod08g2192	08	49646638	49650798	Dod08g2192	08	49646638	49650798	ECH