Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2028 ATGTCCAACCAAGAATCAAATTCAAAACCACTTCTTGCTGCTGATTTTTCCACCAATATCATCAGTGATCATCATAATGGCTTTCATGAACAACAACAACGTTATGATGATCATAATCATGCCTTGTTGTTGAGGCAACAAAATCAACAAAGCCCCTTTTCCCAGAATCATCAGAATCTTGAAGATGCTTTGTCTCGTCTCTCCTTGATGCCCCAGAATCAGAATCACCACACACCTATGAATCTTGGTGGGGAAGCCTCAAATATCTTCTCCATCGATGAAAGGCTTAAAGGATACCCTTTTGTTCCAAACCATAGTTCTGATGTGGGACTAATGCAAGAGAGTAACAACAGGGGATACCCTTTTGCTCCTAATCATAGTTCCGATGTGGGACTAATGCTACAACAGCAGGAGAGTAACAACAACATTGGGTTTCAGACACTGCCTTGGTTCAACACCAACAACGAATATGTTTCTTCTAGCACTGTTCCAATGGTGCCATCATCACAAAGCTATGGAATCAACAGGTTGAGGTCGAGCCTTATTGCTTCTGTTTATCAGAGAGAGTATCAGAGGCTTCTTTCCATGTCCCAACTTTCGGGGAACAATGAGTTTCTGGGGTTTAGAGGAAGATCTTATGGTGATCATCGTGATCGTGATTTTATGTTGAACTCTTTGATCGGTAACAACAGAAGGAATAATAATGTTTTGGGTCAGAATCTCAATAGTAACAGGCGTCAACAACAACAGCCCTTGATGAGTCACCGTTCGGTGTATGATTTGAGGGGGAGGATTCTGTTTTTGGCTAAGGATCAATGTGGATGCAGGGTCTTGCAGGATGCCATGGATGCCGTGACAACAAAGGAAGAGGTTTCCATTGTTTTCGGAGAGCTTATAGACAATGTGGTTGAGTTGATGCCGAACCCTTATGGGAACTATGTTTTTCAGAGGCTTGTGGAGATATGCAGTGTGGAGCAAATAACTCGAATCGTTTTGATTGTTACACAGAATGCTTTTCAGCTTGTGAATTTGTGCCTTCACACTCATGGGACCCGTGCTGTGCAGAGGTTATTGGAGTGTGTCACCAACGAGGAACAACGATCTCGCATTATGTCAGCGCTAAGCCCAAATGCTGTTGTTTTGTCTAAGGACACGAATGGTCTTCATGTGATTGAGCACTGTGTAAAAAAGTTCGAACACGAAGATACTATGGATTTAATGGATGTCGTAGCAAACAACTGTTTTGAACTCGCAACAGACAAAAGTGGTTGCTGTGTAATGCAGCTCTGCGTTGACCATGCTAAGGGTGAAGTCAAAGAGAAATTGATGGCTGAGATCATAGTCAATGCTCCACTCCTATCAGAAGACTGTTACGGCAACTATGTGGTGCAGCATTTGATTGGTAAGCAAGAACCCAGATTAACAGAAAGCCTTATGGGACAGCTTGAAGGGAGGTTTGTATCAATCTCCTGCAATAAGTATGGAAGCAATGTTGTGGAGAAGCTGTTTCAGGAGTCAGGAGAACATTATTCTAGGCGCATTATCTTGGAATTGCTCCATCATCCTAATATCTCAATGCTTCTTGTGGACCCTTACGGAAATTTTGTCATCAGTTCAGCAGTCTCTGCATCCAGGGTTAGTGCAACATTTTCTACAACTTTTTCAGCCATTATCCGATATGGATATTATGGAGATTCTCTGTTGGTTCTTGGCCCAAGTTCATCACGTTTGGTGAAGGTAAGCTCAGTTTTTGTGAAGAAAGTTGGAGTAAGAAATGAGTATAACAACAACAGTGCTACGCTTTATGCCTTCAATGAGAAGCCTGAGCTAAGTTCCCAAACAAATTGGAGCACATCAAGATTCTTAGTTGCTCCGGCATATACTCGTAAGGGGTTTTCTTTGTGGTTAAATAAGGGCTCCAGCATTCGTATCAGGTTGAAGGCACAGGCCAGTAGCATGAACGAGCTTGAAGGGATGGTGATTAAAGGAGAAAAGAGGCTTGAGAAACTGCTGCCTAAACGAACAATCTCCCCTGATGCAATTACCATTGGAGAGATAGTTAATGGTAAAGAGGTTGAATACATCATTGAGGAAGATGATAGGTACCAAATTGGGGTCCTGAACATGAATGACAGGAACATAATACTGAACATGAATGTCAATGTTTCTGCCAAGGTGTATGATACCACCAAAGCCAATAACATGTGCTGTACTGTGGATGGATCTTGCAGACTTCTCTTCCCTAACACATATTATGTAATTCTGACCCCACCCAAAAATGGAGATGATGGGGGATGGGTTGTTCAAGCTTCTTTGGCGGCTCGTGTGATAGCCTACATAGCTCTTTTAGGGGTCTTAACGATTGTTATTTTTCTGATACTGAAATGCCTCGGAGTTTGTGATGGTGAAAATGATGACAATAGTAATGTGACAGTGGACGCATACAGAACAAGCAATGTAGTTGTTGCACAAGAGATAACAGAACCTGAGCCCACAATGCATGTGAAGCCAAATCCAATGATACACAGAACAAGTGAAGATCATGATGAAGAATTAGATGCTTCCAGCATCTCCTCAGAAGAGTTATATGATGAAAAATTATGTATCATTTGTTATGATGAACAACGCAACTGCTTCTTTGTTCCTTGTGGTCACTGTGCCACTTGCTATGATTGTGCCAAGAGGATTGTGGATGGAGAGAGCAAAGTGTGTCCTGTGTGCAGAAGGGTCATTCACAAAGTACGAAGATTATTTCATAGTTAG 2763 0.4206 MSNQESNSKPLLAADFSTNIISDHHNGFHEQQQRYDDHNHALLLRQQNQQSPFSQNHQNLEDALSRLSLMPQNQNHHTPMNLGGEASNIFSIDERLKGYPFVPNHSSDVGLMQESNNRGYPFAPNHSSDVGLMLQQQESNNNIGFQTLPWFNTNNEYVSSSTVPMVPSSQSYGINRLRSSLIASVYQREYQRLLSMSQLSGNNEFLGFRGRSYGDHRDRDFMLNSLIGNNRRNNNVLGQNLNSNRRQQQQPLMSHRSVYDLRGRILFLAKDQCGCRVLQDAMDAVTTKEEVSIVFGELIDNVVELMPNPYGNYVFQRLVEICSVEQITRIVLIVTQNAFQLVNLCLHTHGTRAVQRLLECVTNEEQRSRIMSALSPNAVVLSKDTNGLHVIEHCVKKFEHEDTMDLMDVVANNCFELATDKSGCCVMQLCVDHAKGEVKEKLMAEIIVNAPLLSEDCYGNYVVQHLIGKQEPRLTESLMGQLEGRFVSISCNKYGSNVVEKLFQESGEHYSRRIILELLHHPNISMLLVDPYGNFVISSAVSASRVSATFSTTFSAIIRYGYYGDSLLVLGPSSSRLVKVSSVFVKKVGVRNEYNNNSATLYAFNEKPELSSQTNWSTSRFLVAPAYTRKGFSLWLNKGSSIRIRLKAQASSMNELEGMVIKGEKRLEKLLPKRTISPDAITIGEIVNGKEVEYIIEEDDRYQIGVLNMNDRNIILNMNVNVSAKVYDTTKANNMCCTVDGSCRLLFPNTYYVILTPPKNGDDGGWVVQASLAARVIAYIALLGVLTIVIFLILKCLGVCDGENDDNSNVTVDAYRTSNVVVAQEITEPEPTMHVKPNPMIHRTSEDHDEELDASSISSEELYDEKLCIICYDEQRNCFFVPCGHCATCYDCAKRIVDGESKVCPVCRRVIHKVRRLFHS* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2028 920 PANTHER OS05G0521000 PROTEIN 545 919 IPR044586 GO:0004842
Dod08g2028 920 SUPERFAMILY RING/U-box 852 914 - -
Dod08g2028 920 Pfam Domain of unknown function (DUF4793) 692 792 IPR032010 -
Dod08g2028 920 Pfam Zinc finger, C3HC4 type (RING finger) 865 914 - -
Dod08g2028 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 445 480 IPR001313 GO:0003723
Dod08g2028 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 408 444 IPR001313 GO:0003723
Dod08g2028 920 SMART ring_2 868 907 IPR001841 -
Dod08g2028 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 297 332 IPR001313 GO:0003723
Dod08g2028 920 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 233 585 IPR033133 GO:0003723
Dod08g2028 920 Pfam Pumilio-family RNA binding repeat 453 476 IPR001313 GO:0003723
Dod08g2028 920 Pfam Pumilio-family RNA binding repeat 378 410 IPR001313 GO:0003723
Dod08g2028 920 Pfam Pumilio-family RNA binding repeat 485 519 IPR001313 GO:0003723
Dod08g2028 920 Pfam Pumilio-family RNA binding repeat 301 331 IPR001313 GO:0003723
Dod08g2028 920 Pfam Pumilio-family RNA binding repeat 265 299 IPR001313 GO:0003723
Dod08g2028 920 Pfam Pumilio-family RNA binding repeat 340 374 IPR001313 GO:0003723
Dod08g2028 920 Pfam Pumilio-family RNA binding repeat 413 447 IPR001313 GO:0003723
Dod08g2028 920 SMART pum_5 260 296 IPR001313 GO:0003723
Dod08g2028 920 SMART pum_5 481 517 IPR001313 GO:0003723
Dod08g2028 920 SMART pum_5 336 372 IPR001313 GO:0003723
Dod08g2028 920 SMART pum_5 445 480 IPR001313 GO:0003723
Dod08g2028 920 SMART pum_5 373 408 IPR001313 GO:0003723
Dod08g2028 920 SMART pum_5 409 444 IPR001313 GO:0003723
Dod08g2028 920 SMART pum_5 297 332 IPR001313 GO:0003723
Dod08g2028 920 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 843 920 IPR013083 -
Dod08g2028 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 336 372 IPR001313 GO:0003723
Dod08g2028 920 SUPERFAMILY ARM repeat 256 543 IPR016024 -
Dod08g2028 920 ProSiteProfiles Zinc finger RING-type profile. 868 908 IPR001841 -
Dod08g2028 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 260 296 IPR001313 GO:0003723
Dod08g2028 920 Pfam Domain of unknown function (DUF4792) 599 667 IPR032008 -
Dod08g2028 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 481 517 IPR001313 GO:0003723
Dod08g2028 920 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 545 919 - -
Dod08g2028 920 Gene3D - 243 561 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2028 Dod-Chr8 47573389 47584951 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g2028 - - cam:101496542 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2028 08 47573389 47584951 Dod08g2028 08 47573389 47584951 ECH