Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod08g1960 | ATGGCTTCTCCTCCTCCTCCTTCTTCTTCTTCTTCAACTCCCATTCCTTCCTTTCAAACTCGCATTCCTCTACCTTCTTCTTCTTCTTCCCCTTCTCTTCAAGGCGACAAACCTCTGAATGATGTTGAGTCTTGCTCCAACACGGTTCCCATTCACGTGGTGACTGCCGTGTCTCAACTACCTGCTGAGTTTCTTGAACCCTCACCTCAGAAGCCTATCGTCGTTGGCTTTGATTGCGAGGGCGAAGACTTGTGTAGGACTGGGAGAGTCTGTGTAATGCAGCTTGCATTTCCAGATGCTATATACCTGGTTGATGCAATCGAAGGGGGAGATGTGCTTATCAAAGCCTGTAAGCCTGCACTTGAGTCTGATTATGTCACAAAAGTGATTCATGATTGCAAAAGGGATAGTGAGGCATTGTATTTTCAGTTTGGCATCAAGTTGAACAATGTGATGGATACCCAGATTGCTTATGCTCTGATAGAGGAGCAGGAAGGGCGGAAGAGATTGACAGATGACTACATTTCCTTTGTTGGCCTCCTTGCTGATCCAAGCTATTGTGGCATATCATATTGTGAGAAGGAAGAGGTTCGGGTTCTCCTTCGACAGGACCCCAAGTTTTGGACATACAGACCTTTATCTGAACTTATGGTTCGTACTGCTGCTGATGATGTCCGTTTTCTTCTATGCATTTATCATCGAATGATGGAGAAATTGAATGAGCGGTCCTTATGGTATCTTGCGGTTCGTGGTGCCTTGTATTGCCGATGCTTTTGTGTGTCCAGTACTGATTATGCTGATTGGCCGTCTCTACCTCCTGTCCCAGATAAACTAAAAGCTGATGGAAATGGCCCCGAGGAAGAAATTCTTTCAGTTCTAGACATTCCCTCAGGAAAGATGGGACGTGTTATTGGGAAAAAAGGGACTACAATTTTGACAATTAAGGAGTCTTGCAATGCGGAAATCCACATTGGAGGTGCCAAGGGTCCACCTGACAAGGTCTTCATCATTGGACCAGTGAAGCAGGTGAGGAAAGCTGAGGCCCTGGTTAGGGGCAGAATCTAG | 1065 | 0.4601 | MASPPPPSSSSSTPIPSFQTRIPLPSSSSSPSLQGDKPLNDVESCSNTVPIHVVTAVSQLPAEFLEPSPQKPIVVGFDCEGEDLCRTGRVCVMQLAFPDAIYLVDAIEGGDVLIKACKPALESDYVTKVIHDCKRDSEALYFQFGIKLNNVMDTQIAYALIEEQEGRKRLTDDYISFVGLLADPSYCGISYCEKEEVRVLLRQDPKFWTYRPLSELMVRTAADDVRFLLCIYHRMMEKLNERSLWYLAVRGALYCRCFCVSSTDYADWPSLPPVPDKLKADGNGPEEEILSVLDIPSGKMGRVIGKKGTTILTIKESCNAEIHIGGAKGPPDKVFIIGPVKQVRKAEALVRGRI* | 355 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod08g1960 | 354 | CDD | Egl_like_exo | 64 | 259 | - | - | |
| Dod08g1960 | 354 | ProSiteProfiles | Type-1 KH domain profile. | 288 | 350 | - | - | |
| Dod08g1960 | 354 | PANTHER | - | 18 | 354 | - | - | |
| Dod08g1960 | 354 | CDD | KH-I | 293 | 350 | - | - | |
| Dod08g1960 | 354 | SUPERFAMILY | Ribonuclease H-like | 46 | 261 | IPR012337 | - | |
| Dod08g1960 | 354 | SMART | kh_6 | 287 | 354 | IPR004087 | GO:0003676 | |
| Dod08g1960 | 354 | Pfam | 3'-5' exonuclease | 63 | 239 | IPR002562 | GO:0003676|GO:0006139|GO:0008408 | |
| Dod08g1960 | 354 | PANTHER | EGALITARIAN, ISOFORM B | 18 | 354 | - | - | |
| Dod08g1960 | 354 | Gene3D | K Homology domain, type 1 | 277 | 354 | IPR036612 | GO:0003723 | |
| Dod08g1960 | 354 | MobiDBLite | consensus disorder prediction | 13 | 39 | - | - | |
| Dod08g1960 | 354 | Pfam | KH domain | 293 | 351 | IPR004088 | GO:0003723 | |
| Dod08g1960 | 354 | Gene3D | - | 9 | 256 | IPR036397 | GO:0003676 | |
| Dod08g1960 | 354 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Dod08g1960 | 354 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 283 | 353 | IPR036612 | GO:0003723 | |
| Dod08g1960 | 354 | SMART | 35exoneu6 | 51 | 240 | IPR002562 | GO:0003676|GO:0006139|GO:0008408 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod08g1960 | Dod-Chr8 | 46468428 | 46474060 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod08g1960 | K18740 | - | gmx:100788577 | 537.724 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dod08g1960 | 08 | 46468428 | 46474060 | Dod08g1960 | 08 | 46468428 | 46474060 | ECH |