Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1946 ATGGCCGAAGAATCTCAATACCCCTCCGAAACCACCACCACCCCTCCTTCCTTGAAGCGCAAGTACGACGAGCAACAACCACTGGCGCCGCGCCCCACTGGCTTCTCCTCCCCCGGCGACGCCCCTCCGCCGTCCTACAACAGCGTCGCTCCGCCCGCCCCTTCCGGCATCGAGCTCGCCAAGCAGCGAGCCCAGGAGGTCGCCGCTCGCCTTCTCAGCGGCGCCCCTCCCTCCCTCGACCCCGCCAAGCGCTCCAAGTTCGATAACGGCGCTGCTGCTCCTCCCTCCAATTTCGATTCCATCGATGTGAAGCCTCAGTACTCAATGCCTACAATTTCTCCATCAGCGGTTTCTTACGGGCACCAGGGTGCAAGTAAGAAGATTGATGTCCCTAATGGAAGGGTTGGCGTTATTATTGGAAAGGGTGGTGAGACCATCAAGTACCTTCAGCTGCAATCTGGGGCAAAAATTCAGGTTACCCGTGACATGGATGCTGACCCCAATTCACCTAGTAGGACTGTCGAGCTTATGGGTACTCCTGATGCGATTGCTGCTGCTGAGAAGCTCATTAATGAAGTTCTCGCTGAGGCTGAAGCTGGAGGTTCTGGTATTGCGGCCCGACGACTGACTGGACAAGCTGGGTCTGATGAATTTGTGACGAAGATCCCAAATAACAAGGTTGGTCTTGTTATTGGTAAAGGAGGAGAATCGATAAAGAATATGCAGGCTTCGACTGGTGCAAGAATTCAGGTGATTCCCCTTCATCTTCCCCCAGGTGACACATCCACTGAAAGAACATTAAAAATTGAAGGGACCCCGGAACAAATTGAGTCTGCAAAACAATTGGTTAATCAAGTTATAAGTGGCGAGAATCGTCTTAGAAATCCAGCAATGTCTGGTGGTTATTCTCAGCAAGGTTACCAAGCCCGGCCACCATCTAGCTGGGCACCTCCTCAGCAACCTGGTTATGGCTACGTGCAGCCTGGAGCATACTCGGGCCCATCACCCCAGTATAACGTGCCTCAGCCACCATATGCCGGCTACCCTCCCCCGTCATCTGGTGGATATTCAACTAATTGGGACCAGTCCACTGCACCACCTTCCCAGCAGTCTACTCAGGTGCTGGGTATGACTACTATGGTCAACAGCAGAACCCTGGGGGTGCACCTCCTGCTGATGGGAGTGCTTACAATTACAGTCAACCACCTTCTACAGGTTATAACCAACCTGGACAGGGCTATGCTCAGGATGGCTATGGTGGCTATCATGCACCACCTCAATCAGGGTATGGACAGCCACCATCATATGATCAGCATCAAGGTTATAGCTCAGCCCCTAATTATGGTAGTGGAAGCAACCCAGCACAAGAGGGCCATACTCCTAATAATGGATCGGGGGATTCAACCCAAGTTCCACCTGTCCAACCTTCTTCCATTACCCCACAAGGTTATGGTACCGGAAATGCTGCTAACTATCCTCCACAAGGTACTGCTCAGCCTGGTTATGGGGTGCCCCCCACCTCCCACGTAG 1530 0.5314 MAEESQYPSETTTTPPSLKRKYDEQQPLAPRPTGFSSPGDAPPPSYNSVAPPAPSGIELAKQRAQEVAARLLSGAPPSLDPAKRSKFDNGAAAPPSNFDSIDVKPQYSMPTISPSAVSYGHQGASKKIDVPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPSRTVELMGTPDAIAAAEKLINEVLAEAEAGGSGIAARRLTGQAGSDEFVTKIPNNKVGLVIGKGGESIKNMQASTGARIQVIPLHLPPGDTSTERTLKIEGTPEQIESAKQLVNQVISGENRLRNPAMSGGYSQQGYQARPPSSWAPPQQPGYGYVQPGAYSGPSPQYNVPQPPYAGYPPPSSGGYSTNWDQSTAPPSQQSTQVLGMTTMVNSRTLGVHLLLMGVLTITVNHLLQVITNLDRAMLRMAMVAIMHHLNQGMDSHHHMISIKVIAQPLIMVVEATQHKRAILLIMDRGIQPKFHLSNLLPLPHKVMVPEMLLTILHKVLLSLVMGCPPPPT* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1946 509 MobiDBLite consensus disorder prediction 352 372 - -
Dod08g1946 509 MobiDBLite consensus disorder prediction 294 313 - -
Dod08g1946 509 MobiDBLite consensus disorder prediction 294 372 - -
Dod08g1946 509 ProSiteProfiles Type-1 KH domain profile. 123 190 - -
Dod08g1946 509 MobiDBLite consensus disorder prediction 1 20 - -
Dod08g1946 509 CDD KH-I 221 283 - -
Dod08g1946 509 MobiDBLite consensus disorder prediction 36 50 - -
Dod08g1946 509 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 219 290 IPR036612 GO:0003723
Dod08g1946 509 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 75 373 - -
Dod08g1946 509 Gene3D K Homology domain, type 1 212 313 IPR036612 GO:0003723
Dod08g1946 509 Gene3D K Homology domain, type 1 118 211 IPR036612 GO:0003723
Dod08g1946 509 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 126 201 IPR036612 GO:0003723
Dod08g1946 509 MobiDBLite consensus disorder prediction 1 105 - -
Dod08g1946 509 Pfam KH domain 221 284 IPR004088 GO:0003723
Dod08g1946 509 Pfam KH domain 127 192 IPR004088 GO:0003723
Dod08g1946 509 SMART kh_6 122 195 IPR004087 GO:0003676
Dod08g1946 509 SMART kh_6 214 288 IPR004087 GO:0003676
Dod08g1946 509 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 75 373 - -
Dod08g1946 509 CDD KH-I 125 190 - -
Dod08g1946 509 ProSiteProfiles Type-1 KH domain profile. 222 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1946 Dod-Chr8 46283465 46289394 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1946 K13210 - gmx:100813135 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1946 08 46283465 46289394 Dod08g1946 08 46283465 46289394 ECH