Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1933 ATGTCGTCTTCTTCAGCAAACGACGCCGTTCAGCGCAACCGCGTCCTCTCGAGCAAGCTCTACTTCGATGTACCTCCTTCCAAGGTTCCGGTTATCTACTCCGAGTCTTACGATATAGCCTTCCTCGGCATGGAGAAACTGCACCCGTTTGATTCGCGTAAATGGGGACGGGTTTGTAGATTCCTCGTGTCGTTTGGTATTCTGGACAAGAAATGCATTGTTGAGCCTCTCGAAGCTTCAAAGGATGATCTTCTAGTGGTACACTCAGAGTCGTACTTGAATAGCCTGAAGGAAAGTTCAAATGTTGCTATGATAATTGAGGTCCCTCCTGTGGCGTTACTTCCCAATTGTCTTGTGCAACATAAAGTTCTTTACCCATTCCGGAAGCAGGTCGGTGGAACTATATTGGCTGCAAAACTTGCAAAGGAAAGAGGATGGGCCATTAATGTAGGAGGAGGATTTCATCACTGCTCTGCAGAAAAAGGAGGTGGATTTTGTGCATATGCAGATATTTCTCTATGCATCCACTTTGCTTTTGTTCGGTTGAACATATCAAGGGTGATGATTATTGATCTTGATGCACATCAAGGAAATGGTCATGAAATGGACTTTGCCTATGACAGTCGAGTATATATTCTGGATATGTACAACCCTGGAATATATCCTTTGGATTATGAGGCAAGGAATTACATTAATCAGAAAGTTGAAGTGAAGAGTGGGACACTTACAGAAGATTACCTGCAGAAATTAGATGAAGCACTAGAGGTTGCTGGGCATAGGTTTGACCCTGAGTTGGTAGTTTACAATGCTGGAACTGACATCCTAGATGGTGATCCATTAGGAAGGTTGAAGATCAGTCCTGATGGGATTGCCGTTAGAGATGAGAAAGTTTTTCGGTTTGCCCGTGAGAAGAACATTCCTATCATTATGCTCACTTCAGGTGGTTACATGAAGTCCAGTGCTAGAGTCATTGCAGATTCAATACTCAATCTCTCGAAGAAATGCTTGATAGAGATGAGTGGGGTTCCAACGGCTGCATAA 1041 0.4371 MSSSSANDAVQRNRVLSSKLYFDVPPSKVPVIYSESYDIAFLGMEKLHPFDSRKWGRVCRFLVSFGILDKKCIVEPLEASKDDLLVVHSESYLNSLKESSNVAMIIEVPPVALLPNCLVQHKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAEKGGGFCAYADISLCIHFAFVRLNISRVMIIDLDAHQGNGHEMDFAYDSRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTLTEDYLQKLDEALEVAGHRFDPELVVYNAGTDILDGDPLGRLKISPDGIAVRDEKVFRFAREKNIPIIMLTSGGYMKSSARVIADSILNLSKKCLIEMSGVPTAA* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1933 346 PRINTS Histone deacetylase superfamily signature 152 175 IPR000286 -
Dod08g1933 346 PRINTS Histone deacetylase superfamily signature 186 201 IPR000286 -
Dod08g1933 346 PRINTS Histone deacetylase superfamily signature 263 273 IPR000286 -
Dod08g1933 346 CDD HDAC_classIV 48 331 IPR044150 GO:0004407|GO:0016575
Dod08g1933 346 Pfam Histone deacetylase domain 48 329 IPR023801 -
Dod08g1933 346 SUPERFAMILY Arginase/deacetylase 26 331 IPR023696 -
Dod08g1933 346 Gene3D Histone deacetylase domain 28 340 IPR037138 -
Dod08g1933 346 PANTHER HISTONE DEACETYLASE 11 3 340 - -
Dod08g1933 346 PANTHER HISTONE DEACETYLASE 11 3 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1933 Dod-Chr8 46141109 46150247 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1933 K11418 - gmx:100781276 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1933 08 46141109 46150247 Dod08g1933 08 46141109 46150247 ECH