Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1921 ATGGAACGTGCAAGGAGGCTCGCTAACCGCGCCATTCTGAAGCGTCTCGTCTCCGAAGCCAAACACTACCGTAACCACCACGAGCCACTCTCCACAGCCACCCTTCTCTACGCTCCCTCAAGCCGCGTCTCCACCCTCCCCTCCCCTGCACCCAAATCCACAGGATCCAGACCCCACACCAACCACACCAACAACCTCAACAACCTCCTTAGCAGAAACATCCACACCACCACCACCACGCTAACCTCACGCACTGTCACCGCTTCCCCCTCACAGCACCGCCACCAACAAACTCGATCCATTTCCGTTGAAGCTCTCAAACCGAGCGACACGTTCCCTCGGCGCCACAACTCCGCAACGAAAGATGAACAAGGCAACATGGCTCAGTCGTGTGGGTTCGACACTCTCGATTCCCTCATCGACGCGACGGTTCCGAAATCGATTCGGCTGAGCGACATGAGATTCAGCAAGTTCGACGGAGGGTTAACGGAAGGCCAGATGATAGAACACATGAAGGAGTTGGCTTCGAAGAATAGAGTTTTCAAGTCGTACATTGGTATGGGATACTACAACACTCACGTTCCGCCGGTGATTCTGAGGAACATTCTGGAAAACCCTGCTTGGTACACGCAGTACACGCCTTACCAGGCTGAGATATCACAAGGGAGACTCGAATCGTTGCTGAATTATCAAACGATGATCACTGATCTCACTGGCTTGCCAATGTCCAATGCTTCATTGCTTGATGAAGGAACTGCTGCTGCTGAAGCAATGTCTATGTGTAACAACATTCAGAAAGGGAAGAAGAAGACTTTTGTTATTGCAAGTAACTGTCATCCGCAGACCATTGATATTTGTGAGACGAGGGCTGCTGGTTTTGATCTTAAGGTTGTGACTGTGGATCTTAAGGATGTTGATTACAGTTCTGGTGATGTTTGTGGTGTGCTTGTCCAGTACCCTGGGACTGAAGGTGAGGTTTTGGACTATGGGGAGTTTATTAAGAAGGCGCATGCTCATGGGGTTAAGGTTGTTATGGCCACTGATCTATTGGCGCTGACTGTGTTGAAGCCTCCTGGTGAGCTGGGGGCGGATATTGTTGTTGGCTCGGCGCAGAGGTTTGGGGTTCCGATAGGCTATGGAGGGCCTCATGCTGCTTTTTTGGCAACTTCCCAAGAGTACAAGAGGATGATGCCTGGGAGAATCATTGGTGTCAGTGTTGATTCGTCTGGAAAGCCGGCTTTGAGAATGGCAATGCAAACTAGGGAGCAGCATATTCGTAGGGACAAGGCTACCAGCAACATTTGTACCGCCCAGGCACTGCTTGCAAACATGGCTGCTATGTATGCTGTATATCATGGACCTGAAGGCCTCAAGACCATTGCTCAACGTGTTCATGGTCTTGCTGGGGTATTTGCTCTGGGATTAAAGAAACTTGGAATAGAAGTTCAGGATCTTCCCTTCTTTGACACGGTGAAGGTTAAGACAGTCAATGCCCATGCAATTGCTGATGCTGCTCTCAAAAGTGAAATCAATTTGCGAGTTGTAAATGGAAACACTATCACTGTTGCTTTTGATGAAACAACCACATTGGAGGATGTGGATAAGCTTTTCAAAGTTTTTGCTAGTGGCAAGCCTGTCTCCTTCACAGCTGCATCTCTTGCACAAGAAGTACAGACTGCAATTCCTTCTGGATTAACTAGGGAGAGCCCTTATTTGACACACCCTATCTTTAACACGTACCACACTGAGCATGAGCTGCTCAGATACATTCATAGGTTACAGTCAAAGGATCTCTCACTGTGCCACAGTATGATCCCACTGGGATCTTGTACGATGAAGTTGAATGCAACAACTGAAATGATGCCAGTAACATGGCCCAGCTTTGCTGATATTCACCCTTTTGCACCAACTGAACAGGCTCAAGGTTATCAGGAAATGTTCAACAATTTGGGAGAACTGTTGTGTACCATCACTGGATTTGACTCCTTCTCTTTGCAACCAAATGCTGGAGCTGCTGGAGAGTATGCTGGACTGATGGTTATTCGTGCATATCATTTGGCAAGAGGAGACCACCACAGGAATGTTTGCATTATACCTGTCTCAGCCCATGGCACAAATCCTGCTAGTGCTGCTATGTGTGGAATGAAAATTGTCTCTGTTGGAACCGATGCTAAGGGAAACATTAACATTGAAGAATTGAGGAAGGCTGCTGAAACACATAAGGACAACTTATCTGCACTTATGGTAACATATCCTTCAACCCACGGTGTTTATGAAGAAGGTATTGATGAGATTTGCAAGATTATTCATGATAATGGAGGCCAAGTATATATGGATGGTGCCAACATGAATGCACAGGTGGGACTTACAAGCCCTGGCTGGATTGGAGCAGATGTTTGTCATCTCAATCTCCATAAGACATTTTGCATCCCTCATGGAGGAGGTGGCCCCGGAATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCTTCACACCCTGTGGTCCCCACTGGTGGAATTCCTGCCCCTGAGAAGTCTCAACCACTTGGTACCATCTCTGCTGCACCTTGGGGCTCAGCACTCATATTGCCAATCTCTTACACCTATATAGCCATGATGGGTTCTAAAGGACTCACCGACGCATCAAAGATAGCCATTTTGAATGCAAACTACATGGCCAAAAGATTGGAGAATCATTACCCGGTTCTCTTCCGTGGAGTCAATGGAACAGTTGCTCATGAATTCATTATTGACTTAAGAGGCTTTAAGAATACTGCTGGCATAGAACCTGAAGATGTTGCGAAGCGCCTCATGGACTATGGGTTTCATGGACCAACAATGTCATGGCCAGTACCTGGCACGCTCATGATTGAGCCCACTGAAAGTGAAAGCAAGGCCGAGTTAGACAGGTTTTGTGACGCTCTTATTTCCATCAGAGAAGAAATTGCCGAGATTGAGAAAGGAAAAGCTGACATTAACAACAATGTGCTTAAGGGAGCCCCTCATCCACCATCATTGCTCATGGGAGATGCATGGACTAAACCATACTCTCGTGAATATGCAGCCTTCCCAGCTTCCTGGCTCCGCGTTGCAAAGTTCTGGCCTACCACAGGGCGTGTTGATAATGTGTACGGTGACCGCAACCTCATTTGCACCCTTCTGCCGGCATCACATGTTGTTGAAGAACAAGCTGCTGCCACAGCCTAG 3216 0.477 MERARRLANRAILKRLVSEAKHYRNHHEPLSTATLLYAPSSRVSTLPSPAPKSTGSRPHTNHTNNLNNLLSRNIHTTTTTLTSRTVTASPSQHRHQQTRSISVEALKPSDTFPRRHNSATKDEQGNMAQSCGFDTLDSLIDATVPKSIRLSDMRFSKFDGGLTEGQMIEHMKELASKNRVFKSYIGMGYYNTHVPPVILRNILENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGKKKTFVIASNCHPQTIDICETRAAGFDLKVVTVDLKDVDYSSGDVCGVLVQYPGTEGEVLDYGEFIKKAHAHGVKVVMATDLLALTVLKPPGELGADIVVGSAQRFGVPIGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFALGLKKLGIEVQDLPFFDTVKVKTVNAHAIADAALKSEINLRVVNGNTITVAFDETTTLEDVDKLFKVFASGKPVSFTAASLAQEVQTAIPSGLTRESPYLTHPIFNTYHTEHELLRYIHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFADIHPFAPTEQAQGYQEMFNNLGELLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEELRKAAETHKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPEKSQPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLENHYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAEIEKGKADINNNVLKGAPHPPSLLMGDAWTKPYSREYAAFPASWLRVAKFWPTTGRVDNVYGDRNLICTLLPASHVVEEQAAATA* 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1921 1071 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 106 1062 IPR003437 GO:0004375|GO:0006544
Dod08g1921 1071 MobiDBLite consensus disorder prediction 42 69 - -
Dod08g1921 1071 CDD GDC-P 583 978 IPR020581 GO:0004375|GO:0006546
Dod08g1921 1071 Gene3D Aspartate Aminotransferase, domain 1 184 536 IPR015422 GO:0003824
Dod08g1921 1071 Gene3D - 622 873 IPR015421 GO:0003824
Dod08g1921 1071 Gene3D - 195 455 IPR015421 GO:0003824
Dod08g1921 1071 SUPERFAMILY PLP-dependent transferases 115 541 IPR015424 -
Dod08g1921 1071 Pfam Glycine cleavage system P-protein 552 833 IPR020581 GO:0004375|GO:0006546
Dod08g1921 1071 Pfam Glycine cleavage system P-protein 115 540 IPR020581 GO:0004375|GO:0006546
Dod08g1921 1071 CDD GDC-P 164 540 IPR020581 GO:0004375|GO:0006546
Dod08g1921 1071 Gene3D Aspartate Aminotransferase, domain 1 874 1009 IPR015422 GO:0003824
Dod08g1921 1071 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 1071 - -
Dod08g1921 1071 SUPERFAMILY PLP-dependent transferases 578 1056 IPR015424 -
Dod08g1921 1071 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 1071 IPR020581 GO:0004375|GO:0006546
Dod08g1921 1071 Coils Coil 730 750 - -
Dod08g1921 1071 TIGRFAM gcvP: glycine dehydrogenase 115 1055 IPR003437 GO:0004375|GO:0006544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1921 Dod-Chr8 45871691 45879230 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1921 K00281 - gmx:100819714 1873.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1921 08 45871691 45879230 Dod08g1921 08 45871691 45879230 ECH
Dod08g1921 08 45871691 45879230 Dod09g1981 09 41282043 41288436 PCT