Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1901 ATGGTTGCTACAGAAACTGCGAGTTTAAAAGATCGGCTATGGCGTGCAGCTAGGTCCCTTGCAGTGTTCTTTCTCTTGGTTACTGGTGCAGGAGCACTCATTGAGGATAAAGGAATTACTTACGGAGTTGGTGCAAATGAAGGAGTGCAACCCATCATGGGGTCAAGTACTAAACTTAACGATGTAAAAGGTGTTGATGAAGCAAAGGCAGAGCTTGAAGAAATTGTTCACTTCCTTCGAGATCCTAAGCGCTTTACTCGTCTTGGTGGTAAGCTTCCAAAAGGAGTTTTGCTTGTTGGTCCTCCTGGCACTGGAAAAACCATGTTGGCAAGAGCTATAGCTGGAGAGGCTGGGGTTCCTTTCTTTTCATGCAGTGGAAGTGAATTTGAAGAGATGTATGTTGGTGTTGGTGCACGAAGGGTTAGGGAGCTTTTTTCTGCTGCAAAGAAGCAATCGCCTTCTATAATCTTCATTGATGAGATAGATGCTATCGGAGGAAGCCGAAATCCAAAGGACCAAATGTACATGAAGATGACATTAAACCAATTGTTGGTTGAGCTAGATGGATTCAAACAAAATGAAGGCATAATTGTGATTGCAGCTACTAATTTTCCGCAGTCATTGGATAAGGCTTTGGTGAGACCCGGTCGGTTTGATCGCCATGTTGTTGTTCCCAATCCAGATGTAGAGGGCAGACGGCAGATTTTGGAATCACACATGTCAAAGGTTATGAAGGCTGATGATGTTGATTTAATGATCATTGCTCGAGGAACCCCTGGGTTCTCAGGTGCTGACCTTGCGAACTTGGTTAACGTAGCTGCTCTCAAGGCTGCAATGGATGGTGCTAAAGCCGTGAGCATGACTGATTTGGAGCATGCAAAGGACAAGATTATGATGGGAAGTGAGCGTAAGTCAGCTGTCATATCTGAGGAGTCGCGAAAGTTGACCGCTTTCCATGAGGGTGGTCACGCCCTTGTGGCCATTCATACTGATGGAGCCCTTCCTGTTCACAAGGCAACGATAGTTCCTCGAGGGATGGCTCTTGGCATGGTTTCTCAATTGCCTGACAAGGATCAGACCAGCATCTCCCGGAAACAGATGCTTGCCCGGCTTGATGTTTGCATGGGTGGCCGGGTTGCTGAAGAGCTAATTTTTGGAGAAAATGAAGTTACCTCTGGTGCATCCTCAGATCTCCAGCAGGCAACTAGTCTGGCGAGGGAAATGGTTACTAAATATGGTATGGGAAATGAAGTGGGACTTGCCACTCATGATTACAATGATGATGGGAGAAGCATGAGCTCAGAGACGAGGCTTCTTATTGAGAAAGAGGTGAAGCACTTGCTGGAGAGGGCTTACTACAATGCAAAAACTATTCTAACCACCCACATAAAGGAGCTTCATGCACTTGCAAATGCTCTTTTGGAGCATGAGACTCTTACAGGAAGTCAAATAAAGGCATTGCTTGCTCAAGTTAGATCACTGAAGCAGCAGCAGCCGCATGTAGTTGAAGCGCAGAGCAGTTTGCAACCCAACCCAGCAGCATCGGCTGCTGCAGCTGCGGCAGCCGCAGCAGCTGCAGCTACTGCTGCTGCCAAAGCTCAAGGTGTACCAGTGGGATCTTAG 1623 0.4701 MVATETASLKDRLWRAARSLAVFFLLVTGAGALIEDKGITYGVGANEGVQPIMGSSTKLNDVKGVDEAKAELEEIVHFLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMYVGVGARRVRELFSAAKKQSPSIIFIDEIDAIGGSRNPKDQMYMKMTLNQLLVELDGFKQNEGIIVIAATNFPQSLDKALVRPGRFDRHVVVPNPDVEGRRQILESHMSKVMKADDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVSMTDLEHAKDKIMMGSERKSAVISEESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVSQLPDKDQTSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATSLAREMVTKYGMGNEVGLATHDYNDDGRSMSSETRLLIEKEVKHLLERAYYNAKTILTTHIKELHALANALLEHETLTGSQIKALLAQVRSLKQQQPHVVEAQSSLQPNPAASAAAAAAAAAAAATAAAKAQGVPVGS* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1901 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 320 IPR027417 -
Dod08g1901 540 Pfam AAA+ lid domain 248 291 IPR041569 -
Dod08g1901 540 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 54 488 IPR005936 GO:0004176|GO:0004222|GO:0016020
Dod08g1901 540 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 12 492 IPR005936 GO:0004176|GO:0004222|GO:0016020
Dod08g1901 540 Pfam Peptidase family M41 307 486 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Dod08g1901 540 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 1 520 - -
Dod08g1901 540 Gene3D - 47 226 IPR027417 -
Dod08g1901 540 Gene3D Peptidase M41 301 498 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Dod08g1901 540 SUPERFAMILY FtsH protease domain-like 307 491 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Dod08g1901 540 Gene3D - 227 300 - -
Dod08g1901 540 CDD AAA 93 225 - -
Dod08g1901 540 Pfam ATPase family associated with various cellular activities (AAA) 96 225 IPR003959 GO:0005524|GO:0016887
Dod08g1901 540 ProSitePatterns AAA-protein family signature. 196 214 IPR003960 GO:0005524|GO:0016887
Dod08g1901 540 PANTHER METALLOPROTEASE M41 FTSH 1 520 - -
Dod08g1901 540 SMART AAA_5 92 228 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1901 Dod-Chr8 45516370 45520623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1901 46 488 Miscellaneous Gene Families AT5G53170 61.851 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1901 K08955 - gmx:100808349 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1901 08 45516370 45520623 Dod08g1901 08 45516370 45520623 ECH