Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1896 ATGGAGATCTTTGGAGACGATGGAACCCCACACAACATCAATGGTATCAAGCACAACGCACCTGAAAAACAGCCTTACCGAACTTGGTACCACTTTCAACCCCCACAAAATTGGATGAACGGTCCAATGTACTACAAAGGAGTTTACCACTTTTTCTACCAATATAATCCATATGCACCAACCTTTGGTGAGAAAATGGTATGGGGTCACTCTGTATCATATGATCTCATAAATTGGATTCATCTGAATAATGCTATTGAACCAAGCGAACCTTATGACATCAATAGCTGTTGGTCAGGCTCAGCTACTACACTCCCAGGAGAAAAACCTGTTATTTTGTACACAGGTATTGATGACAACAAACACCAAGTTCAAAACTTGGCTATGCCAAAGAATCTGTCTGATCCTTTGTTGAGGGAATGGGTCAAACACCCTCAAAACCCTGTCATGACTCCACCAAGTGGAGTTGAACTGAACAATTTTAGAGACCCTTCAACTGCTTGGTTGGGAAGGGATGGAAAATGGAGGGTTGTCATTGGTGCTCAAAATGGTGATGAAGGGAAGGCTATTCTCAATAAAAGTGAGGATTTTGTTGATTGGACAGTGGATCCAAATCCATTTTATGCATCAGACAATACAGGAGTTGTTGAATGCCCAGATTTTTTTCCAGTATCCATAAATAGCAAAAATGGGGTGGACACGTGTGACCGAAATTTGAGTGTTAGACATGTCTTGAAGATAAGCTATCTTAGAAGACATCATGACTTTTATTTTCTTGGTAAATATGTCTCCAATCAGGATAGCTTTATTCCTGATAGCAAGTTCACTGGGACTGGTTCTGACTTAAGGTATGACTATGGTAAATTCTATGCTTCCAAATCATTTTTTGACTATGCCAAAAATAGGAGAATATTGTGGGGATGGGTGAATGAATCTGACACCTCACAAGATGATATTGAGAAAGGATGGGCTGGCTTGCAGACAATTCCAAGGCAAGTTTGGCTTGATAAAGGCAGGGAACGATTGATGCAATGGCCAATTGAGGAGGTAGAAAGACTACGTGACAACCAAGTCAGTATTCTTGGAGAGAAACTGATCAATGGATCAATTCTTGAAGTCTCAGGTGTAACAGCATCGCAGGCCGATGTAGAAGTGTTGTTTGAGCTTCCTGAACTAGAAAATGCAGAGTTGTTAGATCCTAGTGAAGTTGATCCACAACTACTTTGTAGTGAAGAATATGCATCAAGGAGTGGCATAATAGGGCCATTTGGTCTTTTAGCTTTGGCTTCAAAGGATCTCACAGAGCAAACTGCAGTGTCCTTCCGAATATATAGAACTCCTAATAGATATGTATGCCTGATGTGCAGTGACCAAAGCAGGTCTTCATTGAAGAAGGACGTTGAAAAGACAACATATGCAACAATCTTTGACATAGATGCTAACATCAAAACGATTTCACTTAGAAGCTTGATTGATCGGTCCATTATTGAGAGTTTCGGGGACGAAGGAAGAGTTTGCATCACAAGTAGAGTTTATCCCTCAATGGCTATAGACAATGATGCACATCTTTATGTAATTAACAATGGAAGCCAGAGTGTGCTCATCTCAAAACTGAATGCTTGGAGCATGAAGCAAGCAGAATTTGTTCATCAAGAAAATAAAAGCTATAGCTAA 1674 0.4026 MEIFGDDGTPHNINGIKHNAPEKQPYRTWYHFQPPQNWMNGPMYYKGVYHFFYQYNPYAPTFGEKMVWGHSVSYDLINWIHLNNAIEPSEPYDINSCWSGSATTLPGEKPVILYTGIDDNKHQVQNLAMPKNLSDPLLREWVKHPQNPVMTPPSGVELNNFRDPSTAWLGRDGKWRVVIGAQNGDEGKAILNKSEDFVDWTVDPNPFYASDNTGVVECPDFFPVSINSKNGVDTCDRNLSVRHVLKISYLRRHHDFYFLGKYVSNQDSFIPDSKFTGTGSDLRYDYGKFYASKSFFDYAKNRRILWGWVNESDTSQDDIEKGWAGLQTIPRQVWLDKGRERLMQWPIEEVERLRDNQVSILGEKLINGSILEVSGVTASQADVEVLFELPELENAELLDPSEVDPQLLCSEEYASRSGIIGPFGLLALASKDLTEQTAVSFRIYRTPNRYVCLMCSDQSRSSLKKDVEKTTYATIFDIDANIKTISLRSLIDRSIIESFGDEGRVCITSRVYPSMAIDNDAHLYVINNGSQSVLISKLNAWSMKQAEFVHQENKSYS* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1896 557 SUPERFAMILY Concanavalin A-like lectins/glucanases 346 545 IPR013320 -
Dod08g1896 557 CDD GH32_Fruct1-like 37 335 - -
Dod08g1896 557 SMART glyco_32 31 503 IPR001362 GO:0004553|GO:0005975
Dod08g1896 557 Gene3D Glycosyl hydrolase domain; family 43 36 358 IPR023296 -
Dod08g1896 557 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 19 552 - -
Dod08g1896 557 Pfam Glycosyl hydrolases family 32 C terminal 349 542 IPR013189 -
Dod08g1896 557 Pfam Glycosyl hydrolases family 32 N-terminal domain 31 346 IPR013148 -
Dod08g1896 557 SUPERFAMILY Arabinanase/levansucrase/invertase 23 347 IPR023296 -
Dod08g1896 557 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 19 552 - -
Dod08g1896 557 Gene3D - 359 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1896 Dod-Chr8 45060223 45064148 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1896 7 546 Glycoside Hydrolase AT3G13784 53.261 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1896 K01193 - gmx:100806220 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1896 08 45060223 45064148 Dod08g1896 08 45060223 45064148 ECH