Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1839 ATGGGTGAGGCTCCGCAAGTGTTCTACGTTAATGGGTTCTCAAAGTTTGGCCATGAAACTCAAGAAAACCATGGCAATGATATTCAGAACCATGATTCCTCATGGTATGAGGAAGTCATTGACGATGATCTCAAATGGTCTTTTAAACTCAACAGGGTGCTCCATAAAGGGGTTAGCAAATACCAGGACATAGCTCTATTAGATACAAAGCGTTTCGGAAAGGCCTTGATGATTGATGGGAAGATGCAGAGTGCTGAATCTGATGAATTCATTTATCACGAATGCTTGATCCATCCCTCTCTTTTATGTCACCCCAACCCCAAAACAGTGTTTATTATGGGAGGAGGTGAAGGTTCTGCTGCTAGGGAAGCCCTCAAGCACAGGTCAATGGAAAGAATCGTCATGTGTGATATAGACCAGGACGTGGTTGATTTCTGTCGAAAATACTTGACCGTGAATAGGGACACATTTTACCACAAGAAGCTTGACCTTGTGATCAATGATGCCAAGGCTGAGTTGGAAAAGAGAAAGGAGAAATATGATGTGATTGTTGGAGATTTGGCAGACCCACTTGAAGATGGGCCTTGCTATCAGCTGTACACCAAATCCTTCTATGAGAAAATCCTGAAGCCCAAGCTCAATGATAATGGCATTTTTGTGACCCAGGCTGGACCAGCAGGTATCTTCACACACAAGGAGATCTTCACTTCCATACATAACACAATTAAACAGGTCTTCAAATATGTGATGGTATATGCCACTCATGTACCATCTTTCGCTGATACATGGGGATGGGTTATGGCTTCTGATCAACCACTATCGATTAGTGCTGAGGAAATGGACAAAAGAATCGAAGCAAGGATAGATGGGGAATTGCTTTATCTAAATGGTGTTTGGTTCCAATCATCTACTACTATGAATAAGACTGTTTCACAATCTGAGAAGCAAAGAGAAATGTATGAATCAGTGACAAATGGGGATGATCTCTCAGCTGGTCTGAGCCTAGAAACAAAGGCTACTAGCTCAAGAATGTATCAAAGGATTGATCTGGCCATTTTCCTTGGAGCCTGGAAAGACGCCCTGCTGGGTGGTATCGGTGGTTGGGCGTGTATTGTGTATGAGAGGAAAAAAGGATTTGTCTCCATTTGGCCTCTTGGGTTTGGGTTTTATATCTCAGCTAGAGTTCCATCATCATTTGTCTACAAGGAATCTCTTTCAGGCAGCAAAGGAGGGAGAAGCAAAGAGACAGACAAAGAGAGGAAAAGACTGACATCTTCTCCAGCGGCGATTGTCTCCAGTAGAGCACACATCGCGCGCGCTCAGGGGGGCGGATCTTCTCTGGTCACCGCGTGTCCAATGCCGAGATCCAGTCTTCTCTGGTACGCTGTGCAAGGCCGAGATCTGGTCCGCTGGGTTCGCGTCAGTCTGGTGCGAGGCGGCGCCAGTGCGAGAGGAGGGCCGGGATCTAGTATGAGGCGGCGCCGGTGCTTTGTGAAGTGGCGCTGGTGGTGTCTGAAGCGCGCCGGTGCTAGGCGAAGTGGCGTTGGTGCTCGAGGGAAGGCCTGGATCTGGTGTGAGGCGGCGCCGGTCTTGCTCGCGGTGGCGTCGAAGCTAGCCGCGGTGGCCGGAGCTTGCCGAGGTGGTGCCGGAGCTGGTGATGGTGGCATCGGTCCTTGA 1677 0.4836 MGEAPQVFYVNGFSKFGHETQENHGNDIQNHDSSWYEEVIDDDLKWSFKLNRVLHKGVSKYQDIALLDTKRFGKALMIDGKMQSAESDEFIYHECLIHPSLLCHPNPKTVFIMGGGEGSAAREALKHRSMERIVMCDIDQDVVDFCRKYLTVNRDTFYHKKLDLVINDAKAELEKRKEKYDVIVGDLADPLEDGPCYQLYTKSFYEKILKPKLNDNGIFVTQAGPAGIFTHKEIFTSIHNTIKQVFKYVMVYATHVPSFADTWGWVMASDQPLSISAEEMDKRIEARIDGELLYLNGVWFQSSTTMNKTVSQSEKQREMYESVTNGDDLSAGLSLETKATSSRMYQRIDLAIFLGAWKDALLGGIGGWACIVYERKKGFVSIWPLGFGFYISARVPSSFVYKESLSGSKGGRSKETDKERKRLTSSPAAIVSSRAHIARAQGGGSSLVTACPMPRSSLLWYAVQGRDLVRWVRVSLVRGGASARGGPGSSMRRRRCFVKWRWWCLKRAGARRSGVGARGKAWIWCEAAPVLLAVASKLAAVAGACRGGAGAGDGGIGP* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1839 558 Gene3D Vaccinia Virus protein VP39 86 327 IPR029063 -
Dod08g1839 558 Gene3D Spermidine synthase, tetramerisation domain 33 85 IPR037163 -
Dod08g1839 558 CDD AdoMet_MTases 114 222 - -
Dod08g1839 558 Hamap Polyamine aminopropyltransferase [speE]. 34 316 IPR001045 GO:0003824
Dod08g1839 558 Coils Coil 159 179 - -
Dod08g1839 558 MobiDBLite consensus disorder prediction 403 425 - -
Dod08g1839 558 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 34 310 IPR029063 -
Dod08g1839 558 MobiDBLite consensus disorder prediction 408 424 - -
Dod08g1839 558 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 33 270 IPR030374 -
Dod08g1839 558 PANTHER BNAA02G04280D PROTEIN 1 321 - -
Dod08g1839 558 Pfam Spermidine synthase tetramerisation domain 35 86 IPR035246 -
Dod08g1839 558 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 1 321 - -
Dod08g1839 558 Pfam Spermine/spermidine synthase domain 89 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1839 Dod-Chr8 43064561 43073685 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1839 K18787 - gmx:100784972 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1839 08 43064561 43073685 Dod08g1839 08 43064561 43073685 ECH