Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1806 ATGCTCGTGGAGGGAGAGGTGCGGTGGGATCTGAAGTGGTTCCTGCAGTTGCTATTCTCGGCGCTTGTTGTAGCTGTTGGGTTTCACACCTTACTCAAGAACACTGCATCAAAGTACTTTGAGGTACACGCAAAATTTGAACCTGACAACAACAACAACAACAACAACAACAACTGCAATCACAAAACTATGCCGGGCATTCTTGCCAATGGCAATGGCGAACACTTATGCGCAGAGTGCGGCAAACACGCCACCAAGAAGTGCTCGCGCTGCAAAGCAGTCCGATACTGCTCACAAGAATGCCAACAGTCACATTGGAAATCTGGCCATAAGGCAAAATGCAAGGATTTTTGTGACACAAGTGCAGCAAACGGGGCAACTAATTGTGTGTTGAAGCCTTCTGCAGCTGGGGGTAAAAGTTCATCATCAATTGCACTAATACCGGGTTTTGGAACTTCCAGGCCAGTGAAACAGCCTAAAGATGTTCTTTTTTCTTATGATGAATTTGTTAAATTTTTTAGCCTGGAAAAGCCAGGATTTCCTCCTTGTGGACTCTTGAATTGTGGAAACAGTTGCTTTGCAAATGTAGTTCTTCAGTGTCTGTCATTCACAAGGCCACTTGTTGCCTACTTGTTGGAGAAGGGCCACCGCATAGAATGTAGTTCCAATGATTGGTGCTTTCTATGTGAATTTGAAAATCATGTTGAAAGAATGAAGCAAAGTTCACAACCGTTCTCTCCAACGGACATTGTTTCTCGTTTGTCTAATATTGGTGGTACTCTGGGTTCTGGAAGACAAGAAGATGCTCACGAGTTCATGAGGTTTTCCATTGATGCTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTCCCTCCTAAGCTTCAGGAGACCACTCTTATTCAACACATTTTTGGTGGCCGATTTCAATCCAAGGTGATTTGCACAAAATGTGGAAAGATTTCAAATCAGTATGAAAATATGATGGATTTGACAGTAGAAATTCATGGACATGCTGCTTCCTTAGAGGAATGTCTTGACCAGTTCACTACCGAGGAGTGGCTTCATGGGGAAAATATGTATAATTGTGATGGGTGCAAGGACTATGTCAAGGCATGGAAACGTCTTACTGTGAAATATGCTCCAAATATTCTTACAATTGCCTTAAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAGTAGCTTTTCCGGAGACTTTAAATCTTAGCCCTTACATGAGTGAAGATGGAGATGGATCTGACATTTACAAGCTCTATGCTGTTGTAGTCCATATTGATATGCTAAATGCTTCATTTTTTGGTCACTACATCTGTTACATCAAGGATTTCCAAGGAAACTGGTATAGGATTGATGATTGGAAGGTTATGAGTGTGGAATTAGAGGAGGTACTTTCTCAAGGAGCATACATGCTGTTGTATAGCAGGTCTACTGCCCGACCATCAGGCCTTCAACTTCAAACTACTGAATCTTCAGGATCATCAGAACTGCAAACAGTCAAAGTGGAAGTCGAGCAAGGTCCAAATGAGCAAGCTGAATGCTTCTCAAATATGGAGGCTCAGGCTATGACTTGCAATGGAATTTGTGAGGTTTTGCCATCTGATGTTAGTCCAGAATTGAAGGTTTCTGAACGTGCAGAATTGAAGGTTTCTGAACATGCAGATGAGTCTTCCACTGCAATGAACTCTGATGCCAAAAGAGAGCATTCTGAGGACATGATTGATGTTGAGCAAACTGACGATACAAATGAGATTTCCGGTATCGCTGCTGAAGAATCATATATGCCTATTTCTCAAGCCGTTGAAGATTTTGGCAATGTAGATATGGACCAGCCCTTGGAAAAGATGTCTGGTTGCTCAGAAGAGAAAAATGGTACTGATATGGCTAGGACTGGCCCTTCTCCAGGTTCGCCAAATGGGTTTTCTGTTTCAACCCATTTGCAAAATGGGATAGAAGATTCAGAACATAAAAATGTGGTGAAATTCAAGCTGGTAACAGCAAAAGATAATGCATACTTCGGCAATGGCTATGCAAGTGCAAACAAAGCTGCTATTCCAGTTGAAGGTGTTGGTATGCTATTATCTAATGGTAGTTCTTTTCCCACTGAAACTGACCAAGGAAATGGAATTAATAAAATGGAGATATCAGGGGACAGGTTAATAATGTAG 2205 0.4181 MLVEGEVRWDLKWFLQLLFSALVVAVGFHTLLKNTASKYFEVHAKFEPDNNNNNNNNNCNHKTMPGILANGNGEHLCAECGKHATKKCSRCKAVRYCSQECQQSHWKSGHKAKCKDFCDTSAANGATNCVLKPSAAGGKSSSSIALIPGFGTSRPVKQPKDVLFSYDEFVKFFSLEKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLVAYLLEKGHRIECSSNDWCFLCEFENHVERMKQSSQPFSPTDIVSRLSNIGGTLGSGRQEDAHEFMRFSIDAMQSVCLDEFGGEKAVPPKLQETTLIQHIFGGRFQSKVICTKCGKISNQYENMMDLTVEIHGHAASLEECLDQFTTEEWLHGENMYNCDGCKDYVKAWKRLTVKYAPNILTIALKRFQSGRFGKLNKRVAFPETLNLSPYMSEDGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMSVELEEVLSQGAYMLLYSRSTARPSGLQLQTTESSGSSELQTVKVEVEQGPNEQAECFSNMEAQAMTCNGICEVLPSDVSPELKVSERAELKVSEHADESSTAMNSDAKREHSEDMIDVEQTDDTNEISGIAAEESYMPISQAVEDFGNVDMDQPLEKMSGCSEEKNGTDMARTGPSPGSPNGFSVSTHLQNGIEDSEHKNVVKFKLVTAKDNAYFGNGYASANKAAIPVEGVGMLLSNGSSFPTETDQGNGINKMEISGDRLIM* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1806 734 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 664 - -
Dod08g1806 734 Pfam Ubiquitin carboxyl-terminal hydrolase 183 486 IPR001394 GO:0004843|GO:0016579
Dod08g1806 734 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 183 489 IPR028889 -
Dod08g1806 734 MobiDBLite consensus disorder prediction 560 589 - -
Dod08g1806 734 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 20 664 - -
Dod08g1806 734 MobiDBLite consensus disorder prediction 630 650 - -
Dod08g1806 734 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 184 199 IPR018200 GO:0004843|GO:0006511
Dod08g1806 734 Gene3D - 66 119 - -
Dod08g1806 734 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Dod08g1806 734 SUPERFAMILY Cysteine proteinases 179 490 IPR038765 -
Dod08g1806 734 Pfam MYND finger 77 114 IPR002893 -
Dod08g1806 734 MobiDBLite consensus disorder prediction 560 588 - -
Dod08g1806 734 CDD Peptidase_C19E 182 487 - -
Dod08g1806 734 MobiDBLite consensus disorder prediction 715 734 - -
Dod08g1806 734 Gene3D Cysteine proteinases 179 496 - -
Dod08g1806 734 SUPERFAMILY HIT/MYND zinc finger-like 74 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1806 Dod-Chr8 42556694 42564778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1806 10 500 Miscellaneous Gene Families AT4G31670 63.105 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1806 K11855 - gmx:100820594 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1806 08 42556694 42564778 Dod08g1806 08 42556694 42564778 ECH