Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1781 ATGTTCCAAAGAAACCCTTCTTCTTCATACACAAACCCCGAACCCTGCCAGCACCTTGCTGATTACAAGCTCAAGCATGGTTTCAATAGCTACAAGGCCATCCAGAAGCTTCTTGTGACCACCCCAATTGGGAGGACAAGTGTGAAACCAAACACGTGGATACCCAGATGCAGTTACTGCAATTGTTCTAAGGGGAGGCTCTATTTGTGCCTGGCTTGCAATTCAATCTCTTGTTTGGATCATACCCTTTTGCACCCTCAATCTGATTCTGGCCATGCTGTGTTTGTGGACATTGAAAGGGCTGAGCTTTTTTGTGGGGTGTGCAGTGATCAAATCTATGACCCTGATTTTGATCAAGTTGTTATGTCTAAGCACTCATTTTTTGTGGCAAATGGTGTTACTATGAATGAGAGCATTGGCCAAAGATTGATCAAGAGGAGGAGATTGGTTTCTGGGGTTGGATTGGATTTGCACAAATCAAAGTGCAGGGTCCCCACCAGGGATCTCAAGGCCAAATCTTGTTATCCAATTGGTTTGAGGGGTTTGAACAATTTGGGTAGCACATGCTTCATGAATTCTGTGCTGCAGGTTTTGCTTCATGCTCCTCCTTTCAGGGACTATTTCTTGAGTGGTGGACACAGTTTTGAGGCTTGTCAGAGAAGAACCACGGACCGGATGTGTTTGCTCTGTGATGTCAATACTATTTTCTCAGCAGTGTTTTCAGGAGATAGAAATCCATATAGCCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTATGAGCAGCAGGATGCTCATGAGTTTTTCATTTCGATGTTAGACGCAATCCATGAGAAAGAGGGCAAATTGAAGAATGGAAGCAGAGGTAATGGAGATTGCCCATGTATTGCTCATAGGGTGTTCCATGGGCTATTGAGATCAGATGTTACCTGTATGGCCTGCGGATTCACCTCAACAACCTATGACCCTTGTGTGGACATTTCACTTAACTTGGACACTAATTTCTCTTTAACAGAAAAGGGTAAAAAGCTTACGAAACAGAATGAGGATGGCAGTATGTCTACGCTTTTCGGTTGTTTGGATTTGTTCACTAAGCCAGAGAAGTTGGGGTCAGACCAGAAACTTTACTGCCAGAATTGTCAGGAAAGGCAGGACTCGTTGAAGCAAATGTCTATTGGCAAGCTTCCGTTGGTACTTAGTCTGCACGTGAAACGGTTCGAGCACTCCTTTGTTAAAAAGTTGTCAAGAAAAATAGATCGCTACCTACACTTTCCGTTTTCCTTAGACATGACCCCATATTTGTCCTCCTCAATCCTCAGAGCCAGATATGGAAACAGAATTTGTTCTTTTGGGGGAGATGAATCAGATATGTTTTCTGAATATGAGATTTTTTCCGTGGTGACACATTCGGGGACACTTGAGTCTGGTCATTATGTTTCTTTTGTGCGTTTAAGTAGGCAATGGTACAGATGTGATGATGCTTGGATAACTGAAGTTGATGAGGCAACAGTCAGAGCATCACAGTGTTACATGATTTTCTACGTGCAGAAAACCCTCTACAATAAAGCCAATGAAGATCCGGGTCATGGGCCAAAGTCCCCTGGAAGAGATCTATTTCTTCCTATAGTTGGGTGTTGCTAG 1659 0.4358 MFQRNPSSSYTNPEPCQHLADYKLKHGFNSYKAIQKLLVTTPIGRTSVKPNTWIPRCSYCNCSKGRLYLCLACNSISCLDHTLLHPQSDSGHAVFVDIERAELFCGVCSDQIYDPDFDQVVMSKHSFFVANGVTMNESIGQRLIKRRRLVSGVGLDLHKSKCRVPTRDLKAKSCYPIGLRGLNNLGSTCFMNSVLQVLLHAPPFRDYFLSGGHSFEACQRRTTDRMCLLCDVNTIFSAVFSGDRNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGKLKNGSRGNGDCPCIAHRVFHGLLRSDVTCMACGFTSTTYDPCVDISLNLDTNFSLTEKGKKLTKQNEDGSMSTLFGCLDLFTKPEKLGSDQKLYCQNCQERQDSLKQMSIGKLPLVLSLHVKRFEHSFVKKLSRKIDRYLHFPFSLDMTPYLSSSILRARYGNRICSFGGDESDMFSEYEIFSVVTHSGTLESGHYVSFVRLSRQWYRCDDAWITEVDEATVRASQCYMIFYVQKTLYNKANEDPGHGPKSPGRDLFLPIVGCC* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1781 552 ProSiteProfiles Zinc finger UBP-type profile. 29 131 IPR001607 GO:0008270
Dod08g1781 552 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 7 548 - -
Dod08g1781 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 131 IPR013083 -
Dod08g1781 552 SUPERFAMILY Cysteine proteinases 176 522 IPR038765 -
Dod08g1781 552 Gene3D Cysteine proteinases 175 528 - -
Dod08g1781 552 Pfam Zn-finger in ubiquitin-hydrolases and other protein 57 116 IPR001607 GO:0008270
Dod08g1781 552 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7 548 - -
Dod08g1781 552 SUPERFAMILY RING/U-box 15 119 - -
Dod08g1781 552 Pfam Ubiquitin carboxyl-terminal hydrolase 181 520 IPR001394 GO:0004843|GO:0016579
Dod08g1781 552 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 181 196 IPR018200 GO:0004843|GO:0006511
Dod08g1781 552 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 180 523 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1781 Dod-Chr8 42289749 42294034 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1781 181 520 Miscellaneous Gene Families AT2G24640 29.885 9.10e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1781 K11366 - gmx:100806347 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1781 08 42289749 42294034 Dod08g1781 08 42289749 42294034 ECH