Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1729 ATGACCCTCAATAATAAGAGCCTCATGACCACATTATTCACACCCCTTTTGGTTATTATGCTCATGATTATGAGTAGTTTCCAAACCCAAGGTGAATCTTCTGATTTGCAGCATCCATTTCCACCATCTTCAGGAGGGTCAGTTAGAGCTGCATATTGGCCTTCAGGTGATTCCCTCTTACCCTCTTCAATTGACACAAAATACTTCACACACATCTACTATGCTTTTATAGAGCCTGAGCCAAACACTTTCAAGCTCAGCATCACAGACTCTCACCAAAAATTCATACCTGAGTTCATCACTGGCCTCAGCAACCGTTATCCCCCAGTGAAAACTCTATTATCCATAGGAGGTGGTAGCAGCGATTCAACCTTGTTTTCTAGCATGGCTAGGACAAAGCAAAACCGTGAAGCTTTCATCAATTCCACTATCCAAGTTGCTCGCCAATATGGTTTCAATGGCCTTGACTTGGATTGGGAGTTCCCTGAAAATGAACAAGACATGTCAAACCTTGCTTCGCTGTTCAAAGAATGGCACCAAGCTTTGGTGTTGGAAGCTCAGGTTCACAAAAAGCCACGTTTGCTTTTGACTGCTGCAGTGTACTATGCTCATACTATAAAGCTTATTGGGCCTGGACCAAGGTCATACCCGGCCCAAGCCATTAGGGATTACTTGGATTGGGCTAGTCCCATGTGCTTTGATTACCATGGTGCATGGGCTAATGTGACGGGCTATAATGCTGCTTTATATGATCCCAAATCAAATATAAGCACCCAATATGGACTTGGATCTTGGATTAATTCTGGTGTCCCGCCCGCAAAGTTGGTTTTTGGATTACCACTTTATGGGCGGGCATGGAACCTCCAAGATCCGAATGTTCATGGGGCTGGAGCACCTGCGACTGGTGAAGCCACCGACACGGATGGATCTATGGACTATGACGAAATCTTGGTGTTCAATAAAGAGAATAATGCCACGGTTGTGTATGATAGGTCGGCTGTGTCTTACTACACTTATGCAGGCACGACTTGGATTAGTTACGATGATGGACCCTCCATAACAAGGAAGGTTCAATATGCCAAGTCGCTTCGCTTGAAGGGTTATTTCTTTTGGGCTATTGGGAAGGACAAGGATTGGACTATCTCAAGACAAGCTTCAAATGCCTGGGGACACTGA 1176 0.449 MTLNNKSLMTTLFTPLLVIMLMIMSSFQTQGESSDLQHPFPPSSGGSVRAAYWPSGDSLLPSSIDTKYFTHIYYAFIEPEPNTFKLSITDSHQKFIPEFITGLSNRYPPVKTLLSIGGGSSDSTLFSSMARTKQNREAFINSTIQVARQYGFNGLDLDWEFPENEQDMSNLASLFKEWHQALVLEAQVHKKPRLLLTAAVYYAHTIKLIGPGPRSYPAQAIRDYLDWASPMCFDYHGAWANVTGYNAALYDPKSNISTQYGLGSWINSGVPPAKLVFGLPLYGRAWNLQDPNVHGAGAPATGEATDTDGSMDYDEILVFNKENNATVVYDRSAVSYYTYAGTTWISYDDGPSITRKVQYAKSLRLKGYFFWAIGKDKDWTISRQASNAWGH* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1729 391 Gene3D - 281 347 IPR029070 -
Dod08g1729 391 Pfam Glycosyl hydrolases family 18 51 376 IPR001223 GO:0005975
Dod08g1729 391 Gene3D Glycosidases 62 377 - -
Dod08g1729 391 PANTHER CLASS V CHITINASE CHIT5A 32 390 - -
Dod08g1729 391 CDD GH18_plant_chitinase_class_V 48 382 - -
Dod08g1729 391 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 152 160 IPR001579 GO:0004553|GO:0005975
Dod08g1729 391 PANTHER CHITINASE 32 390 - -
Dod08g1729 391 SUPERFAMILY (Trans)glycosidases 47 388 IPR017853 -
Dod08g1729 391 SMART 2g34 47 376 IPR011583 GO:0008061
Dod08g1729 391 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 47 391 IPR001223 GO:0005975
Dod08g1729 391 SUPERFAMILY Chitinase insertion domain 282 347 IPR029070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1729 Dod-Chr8 41128517 41130140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1729 48 389 Glycoside Hydrolase AT4G19810 44.186 4.39e-97 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1729 K01183 - gmx:100787511 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1729 08 41128517 41130140 Dod08g1729 08 41128517 41130140 ECH