Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1705 ATGGGGAAGCCCACTGGGAAAAAGAAGGATCATGAAAGTCCAAAGGCAAATGGTAATAAGGGTGGTCACAAGGCTATGGAGCGTGCAGCCTCCTCCAATTCCAATTCAAATTCCAAAGCCTTTGATGATGACACTGCCATGTTCATCAACATGTCACATGAGCTTAAAGAAGAAGGTAACAGGCTATTTCAGAAGAAGGACCATGAGGGTGCCATGTTGAAGTTTGAGAAGGCACTCAAGCTCCTGCCCAAGAACCACATAGATGCTGCACACCTTCACACCATTATGGCCGTGTGTTACATGCAATTGGGACTCGGCGAGTACCCTCGCGCCATCAATGAATGCAATTTGGCATTGGAGGTGTCACCGAGGTATAGCAAAGCTCTGCTGAAGAGGGCAAAGTGCTATGAGGCGTTGAACCGATTGGATTTGGCTATGAGGGATGTAAGGATTGTTTTGAATTTGGAGCCTAATAACCTTACCGCGTTGGAGATCTTGGATAGTTTGAGGAATACAATGGATGAGAAAGGGATCACTATTGATGAGACTGAGATTGCTTTGGCTACCATGCAGGAGCCTCCGGGCGCGCGGCTGCGAAAAGTGGTGAGGGAGAAGTTGAAGAAGAAGCAGAAGGGTCATAAGAGTGAGGACAAGGCAGAGGATAAGGAGGTTGTTGAGGAGAATATAAATTCCGGTGTTAAGGACAAGGAAGTGGTCAAGAGAACAATTGAGAAGGAGAAATTGGTGAAGAAGAGTGTCGAGCAAGAAAAGCCGGTTGCTAGGACAGTGAAGTTGATATTTGGAGAGGATATAAGATGGGCGCAGCTGCCGGTGAATTGTGGTATGAGGCTGGTGAGGGATGCGATAAAGGATAAATTTCCAGGGTTGAAGGAGGGTGTTCTTGTGAAGTATAAGGATCGAGAAGGCGATTTGGTTACAATCGCCACCAGTGCTGATCTGAGGTTAGCCGAGACTTCTGGTCATGTGCTCGGTTCAATTCGGCTATATATTGCAGAAGTTGATCCTAGTCAAGAACCATCTTATGCTGAAACAACCAAGGAGGGTGAGATGCAAAGAGATGGCGGAAAACCGGGTGGTGATGATATTGAGAATGGAGCTATGGAAGAAGGAGAACAAGTAGCAAACAGGATGATAACTGTGGAGGACTGGCTTGTACAGTTTGCAAGGCTGTTCAAGAACCATGTTGGGTTTGACTCTGATGCATATCTAGATATTCATGAGGTTGGGATGAAGCTATACTCCGAAGCAATGGAGGATACTGCATCAAATGACGATGCTCAAGAGCTGTTTGAAATTGCTGCAGATAAATTTCAAGAAATGGCAGCTTTGGCATTATTTAATTGGGGGAATGTTCACATGTCCAGGGCGAGGAAACGGGTTGCCATTCCAGAAGATGGTTCAAGAGAATCTTCTTTTGAGCATATAAAAGCTGCGTATGAGTGGGCTCGAAAAGAGTATTCAAAAGCAGAAATGAGATATGAAGAAGCCTTGAGAATCAAACCAGACTTTTATGAAGGACTTCTTGCTCTTGGCTATCAGCAGTTTGAGCAAGCAAAGCTCTGCTGGTGTTATTCAGTTGCAAACAAGAAGGACTTAGAAGGTGGCCCTTCTGAAGAGGTTCTGCAGCACTATAACAAGGCAGAGGATAGCATGGAGAAGGGAATGTTGATGTGGGAAGAGATTGAGGAGCAGCGTTTGAATGGACTATCGAAATTAGATGGATACAAAACTCAGTTAGAGAAAATTGGCTTGCATAATCTTTTCAGGGATGTTTCTTCTGAGGAAGCTGAAGAGCAGGCTGCAAAGATGAGGTTACAAATATATCTTTTATGGGGCACCTTGTTGTATGAGCGCTCGGTTGTGGAATATAAGCTAGGCCTACCGACATGGGAGGAATGTGTGGAGGTTGCAGTTGAAAAGTTTGAACTGGCTGGAGCTTCTTCAACTGACATTGGTGTCATGATAAAGAACCATTGTTCCAATAAAACAGCCCTGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAGTTCGATGTTCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTACATTACATCTTGGAGCAAGTTTAA 2157 0.4474 MGKPTGKKKDHESPKANGNKGGHKAMERAASSNSNSNSKAFDDDTAMFINMSHELKEEGNRLFQKKDHEGAMLKFEKALKLLPKNHIDAAHLHTIMAVCYMQLGLGEYPRAINECNLALEVSPRYSKALLKRAKCYEALNRLDLAMRDVRIVLNLEPNNLTALEILDSLRNTMDEKGITIDETEIALATMQEPPGARLRKVVREKLKKKQKGHKSEDKAEDKEVVEENINSGVKDKEVVKRTIEKEKLVKKSVEQEKPVARTVKLIFGEDIRWAQLPVNCGMRLVRDAIKDKFPGLKEGVLVKYKDREGDLVTIATSADLRLAETSGHVLGSIRLYIAEVDPSQEPSYAETTKEGEMQRDGGKPGGDDIENGAMEEGEQVANRMITVEDWLVQFARLFKNHVGFDSDAYLDIHEVGMKLYSEAMEDTASNDDAQELFEIAADKFQEMAALALFNWGNVHMSRARKRVAIPEDGSRESSFEHIKAAYEWARKEYSKAEMRYEEALRIKPDFYEGLLALGYQQFEQAKLCWCYSVANKKDLEGGPSEEVLQHYNKAEDSMEKGMLMWEEIEEQRLNGLSKLDGYKTQLEKIGLHNLFRDVSSEEAEEQAAKMRLQIYLLWGTLLYERSVVEYKLGLPTWEECVEVAVEKFELAGASSTDIGVMIKNHCSNKTALEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHYILEQV* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1705 718 Gene3D - 260 334 - -
Dod08g1705 718 Gene3D Tetratricopeptide repeat domain 49 177 IPR011990 GO:0005515
Dod08g1705 718 Pfam PB1 domain 261 335 IPR000270 GO:0005515
Dod08g1705 718 MobiDBLite consensus disorder prediction 352 370 - -
Dod08g1705 718 PANTHER PROTEIN PHOX4 1 717 - -
Dod08g1705 718 SUPERFAMILY CAD & PB1 domains 256 348 - -
Dod08g1705 718 PANTHER PROTEIN CLMP1 1 717 IPR044517 -
Dod08g1705 718 SMART PB1_new 260 340 IPR000270 GO:0005515
Dod08g1705 718 ProSiteProfiles PB1 domain profile. 260 340 IPR000270 GO:0005515
Dod08g1705 718 ProSiteProfiles TPR repeat profile. 126 159 IPR019734 GO:0005515
Dod08g1705 718 CDD PB1 262 337 - -
Dod08g1705 718 Gene3D Tetratricopeptide repeat domain 406 562 IPR011990 GO:0005515
Dod08g1705 718 SUPERFAMILY TPR-like 52 524 IPR011990 GO:0005515
Dod08g1705 718 MobiDBLite consensus disorder prediction 344 372 - -
Dod08g1705 718 ProSiteProfiles TPR repeat profile. 52 85 IPR019734 GO:0005515
Dod08g1705 718 MobiDBLite consensus disorder prediction 1 22 - -
Dod08g1705 718 SMART tpr_5 477 510 IPR019734 GO:0005515
Dod08g1705 718 SMART tpr_5 90 125 IPR019734 GO:0005515
Dod08g1705 718 SMART tpr_5 126 159 IPR019734 GO:0005515
Dod08g1705 718 SMART tpr_5 52 85 IPR019734 GO:0005515
Dod08g1705 718 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1705 Dod-Chr8 40572376 40577201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1705 40 159 Calmodulin-binding Proteins AT3G25230 31.008 2.02e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1705 - - vra:106765155 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1705 08 40572376 40577201 Dod08g1705 08 40572376 40577201 ECH
Dod08g1705 08 40572376 40577201 Dod09g0863 09 28122401 28127402 PCT