Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1671 ATGATCAAACCCAGGCTCTCACGCGCAATCAACACCATAACACTCCTCCAACTCCCACCAGACACCACGAAGCACAGAATCGCAGAACAAACATGCTTAACCCTCCTTCACTCCTGCAACACCCTCACAGACCTCGCCCAAATCCACACCCTCATTCTCAAACTTGGCCTCCAAAACAACCCTTTAGTCCTTACCAAGTTCGCTTCCACTTCTTCAAACCTCAACGCCATACACTATGCTTCCTCATTCCTGTTCCCCTCTAATGATGATTCCATTGATAATAATAACAAGAGGAATAAGAACAATAATAATCTCTTCTATGATGCCTTCCTCTTTAACACTGTCATCAGGGCCTATGCTCAAACGGGTGACTCAAAGTTAAAGGCTTTGCATTTTTACAAAACCATGCTTCATTATGGGGTTTTGCCTAATAAGTTTACTTACCCTTTTGTGCTTAAGGCATGTGCTGGGATTGGTGGTTTGAAATTGGGGAAAATGGTTCATGGGTCTGTGGTAAAATTTGGTTTTGATGATGATCTTCATGTTCAGAACACAATGATTCATATGTATTGTTGTTGTGAGGAAGGGGTTGAGTTTGCTAGGAAGGTGTTTGAGGAAAGTCCCAAGTTGGATTCAGTGACTTGGAGTGCAATAATTGGAGGGTATGCGCGTTTGGGGCACTCTGTGCAAGCTGTTGGGTTTTTTAGGGAGATGCAGGTAAAGGGTGTTTGCCCTGATGAGATCACAATGGTTTCTGTTTTGTCTGCGTGTACTGATTTAGGTGCACTTGAGCTTGGGAAGTGGTTGGAGTCTTATGTTCAGAGGGAGAACATATCGAAGTCTGTGGAGCTGTGCAATGCGATTATAGACATGTTTGCAAAGTGTGGTGATGTTGACAAGGCTATGAAACTGTTTAGACAAATGAACTTTCGCACCATTGTTTCGTGGACTTCGATTATTGTTGGCCTGGCAATGCACGGTCGTGGCTTGGAGGCTGTTTCCTTGTTTGATGAGATGGTTGGACAAGGGGTGGCACCTGATGATGTTGCTTTCATTGGGGTGCTCTCTGCTTGTAGCCACTCCAGGCTAGTTGATAAAGGGCATTACTATTTCAATTTGATGGAGAGGAATTTCAGCATTGTGCCAAAGATTGAACACTATGGATGTATGGTTGATCTGTTGAGTAGAGCTGGACTTGTCAAGGAGGCATTGGAGTTTGTTCAAAAGATGCCTATTGAGCCGAACCAAATCATATGGAGAAGCATAATCACTGCTTGCCATGCCCGTGGTGAGCTCAAGCTTGGAGAGAGCATCTCAAAAGAGCTGATCAGAAGTGAGCCAATGCATGAGTCTAACTATGTACTGCTTTCAAACATTTATGCGAAATTGCTACGATGGGAGAAGAAGACCAAGGTTAGGGAGATGATGGATATGAGAGGGATGAAGAAGATTCCAGGGAGCACCATGATTGAGCTAAATAATGAAATATATGAGTTTGTTGCTGGAGATAAGTCGCATCATCAGTACAAAGAAATATATGAAATGGTGGATGAGATGGGAAGGGAGATAAAGAGGGCAGGATATGTGCCTACAACATCACAAGTGTTGCTTGACATTGATGAAGAAGACAAAGAAGATGTTTTGCATAGACATAGTGAAAAACTTGCCATAGCTTTTGCTCTTCTGAACACATCCCCTGGGACACCCATTAGGATCGTGAAGAACTTGCGTGTTTGTGAAGATTGTCATTCAGCTACTAAGTTTATATCTAAGGTTTATAGCCGAGAGATTGTGGTGAGGGACCGCAATCGCTTCCACCATTTCAAGAATGGAATTCGAAATTTTTTACTACACTTCCCTTCTGGTGGCTTGACTCCACTGATGCTTCTCACATTTCTCGTTTTCATAGCCATAGCTTGTTGA 1923 0.4316 MIKPRLSRAINTITLLQLPPDTTKHRIAEQTCLTLLHSCNTLTDLAQIHTLILKLGLQNNPLVLTKFASTSSNLNAIHYASSFLFPSNDDSIDNNNKRNKNNNNLFYDAFLFNTVIRAYAQTGDSKLKALHFYKTMLHYGVLPNKFTYPFVLKACAGIGGLKLGKMVHGSVVKFGFDDDLHVQNTMIHMYCCCEEGVEFARKVFEESPKLDSVTWSAIIGGYARLGHSVQAVGFFREMQVKGVCPDEITMVSVLSACTDLGALELGKWLESYVQRENISKSVELCNAIIDMFAKCGDVDKAMKLFRQMNFRTIVSWTSIIVGLAMHGRGLEAVSLFDEMVGQGVAPDDVAFIGVLSACSHSRLVDKGHYYFNLMERNFSIVPKIEHYGCMVDLLSRAGLVKEALEFVQKMPIEPNQIIWRSIITACHARGELKLGESISKELIRSEPMHESNYVLLSNIYAKLLRWEKKTKVREMMDMRGMKKIPGSTMIELNNEIYEFVAGDKSHHQYKEIYEMVDEMGREIKRAGYVPTTSQVLLDIDEEDKEDVLHRHSEKLAIAFALLNTSPGTPIRIVKNLRVCEDCHSATKFISKVYSREIVVRDRNRFHHFKNGIRNFLLHFPSGGLTPLMLLTFLVFIAIAC* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1671 640 Pfam E motif 431 491 IPR046848 -
Dod08g1671 640 TIGRFAM PPR: pentatricopeptide repeat domain 314 347 IPR002885 -
Dod08g1671 640 TIGRFAM PPR: pentatricopeptide repeat domain 213 247 IPR002885 -
Dod08g1671 640 TIGRFAM PPR: pentatricopeptide repeat domain 111 144 IPR002885 -
Dod08g1671 640 TIGRFAM PPR: pentatricopeptide repeat domain 284 308 IPR002885 -
Dod08g1671 640 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 85 605 - -
Dod08g1671 640 Pfam E+ motif 496 523 IPR046849 -
Dod08g1671 640 Pfam DYW family of nucleic acid deaminases 527 612 IPR032867 GO:0008270
Dod08g1671 640 Pfam PPR repeat 386 410 IPR002885 -
Dod08g1671 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Dod08g1671 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Dod08g1671 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 311 IPR002885 -
Dod08g1671 640 Pfam PPR repeat family 211 257 IPR002885 -
Dod08g1671 640 Pfam PPR repeat family 312 359 IPR002885 -
Dod08g1671 640 Gene3D Tetratricopeptide repeat domain 264 365 IPR011990 GO:0005515
Dod08g1671 640 Gene3D Tetratricopeptide repeat domain 161 263 IPR011990 GO:0005515
Dod08g1671 640 Gene3D Tetratricopeptide repeat domain 97 160 IPR011990 GO:0005515
Dod08g1671 640 PANTHER - 85 605 - -
Dod08g1671 640 Pfam Pentatricopeptide repeat domain 98 156 IPR002885 -
Dod08g1671 640 Pfam PPR repeat 286 308 IPR002885 -
Dod08g1671 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 143 IPR002885 -
Dod08g1671 640 Gene3D Tetratricopeptide repeat domain 366 558 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1671 Dod-Chr8 39674259 39677315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1671 112 611 Glycoside Hydrolase AT3G49170 37.624 3.94e-120 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1671 - - lang:109350726 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1671 08 39674259 39677315 Dod08g1671 08 39674259 39677315 ECH