Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod08g1641 | ATGCCATCCCTCAAGCCTCTTGGTCTCGCACTCTTCTCCCTTCGCTCTCTCCATTCCACACTCAAACCAAACCCCACTCCCTCAACGCCATTCTCCCTTCACCGCCTCTCTTCCTCATGGCTGTCCCTCCCCGGAAACCCTCTCATCAATTGGCCCTCACTCCCAACCACCACGCAACCCACTCCGAACCAAAACGCGAACCCAACACCCGAATCCGAACCCAACTTCTCGCGCCGCGATTTCTCTCTTGTTGCTGATCTCTTCGCTGACCCGTCCGTTTCTCCCGGTCCGGCTCTTCATGCCGAGCTGGACCGGTCCGGAATCGAACCGGGCCTGGGCCTATTGCGGGCCGTGTTCGACCATTTCGGTTCGTCGCCGAAGCTGCTGCACTCGATGTTCCTTTGGTCCGAGAAGCGGCCCGGGTTTAGGCCCGACCCGAGGCTGTTCGATGCAGTGGTCGACGTTCTCGCTAAGTCGAGGGAGTTTGACTCCGCATGGACCATGATTCTTGACCGCATCGATAGAAGCGATGAAGAAGTAAAAGAAGAAGAAGAGGATTTGGTTTCTGTTGGTACCTTCGCTATCATGATTCGACGCTATGCGCGTGCAGGTATGGTCCAACCTGCGATTCGAACATTTGAGTTTGCAAGAAATCACAAGTCAGTTAAGGATTCTGGATCAGAATTAAGTTTATTTGAGAAATTGTTGGATTCACTTTGTAAAGAAGGGTCTGTCAGGGCAGCTTATGAGTATTTCCTTCGGAGAAAGAAGATGGATCCATGTTGGGTTCCTTCGATTCAGGTTTATAATATAATGTTAAACGGATGGTTTCGGTCAAGGAAACTCAAACATGCGGAGAGACTTTGTGAAGAGATGAAGAAGGAGAATGTGAGACCAAGTGTTGTGACATATGGTACCCTTGTGGAAGGATATTGTCGGATGCGTCGCTTTGAAAAGGCATTAGAAATGGTTGGTGATATGGCCAAAGAAGGAATTGAACCAAATGCAATTGTCTATAATCCGATAATTGATGCCTTGGCGGAAGCTGGGAGATTTAAGGAGGCTTTGGGGATGATGGAGCGATTTCATGTTTTAGAAATTGGTCCCACTCAATCAACATACAATTCTCTAGTGAAGGGGTTTTGTAAGGCAGGAGATCTTGTAGGTGCCAGTAAGATTCTTAAAATGATGATAAGTAGGGGTTTCTTCCCAAGCTCCACCACCTACAACTACTTCTTTAGGTTCTTTTCAAGATGTGGGAAAATTGAGGAGGGAATGAACCTGTATACCAAGATGATCGAATCTGGTTATACCCCAGATCGATTGACTTACCATCTTCTGTTGAAGATGTTATGCGAAGAGGAGAGGTTAGACTTGGCAGTTCAAGTTAGCAAAGAAATGAGGCATAAAGGATTTGACATGGACTTGGCTACAAGTACCATGCTAATTCATTTGCTATGCAAAATGCATAGGTTGGAAGCGGCTTTTGCAGAATTTGAGGACATGACAAGAAGGGGTATAGTTCCTCAGTATCTCACTTTCCAGAGAATGACTTCTGAGTTAAAAAAACAAGGTATGACTGAAATGGCGCAAAAGCTTTGCAATATGATGTCCTCAGTTCCCCATCCTACCAACTTGCCAAATACTTACATCGAAGATAGAGATGATGCACATGCAAGAAGGAAATCTATAATTCAGAAAGCCAAAGCATTTTCTGATATGCTGAAGGACTGTAAGGAGCCTAGAGAACTTGATAAGTATAGAAGTTCATCCCAGAGTGACGTCTCAAGTGCAAACCATTTGATAGAGGATATTGAGAAAAAGATAAGTACAAGACAAACACCTTTTTCCATCTCAGTGTCAGCAGGGAGCACTAACTGA | 1881 | 0.4572 | MPSLKPLGLALFSLRSLHSTLKPNPTPSTPFSLHRLSSSWLSLPGNPLINWPSLPTTTQPTPNQNANPTPESEPNFSRRDFSLVADLFADPSVSPGPALHAELDRSGIEPGLGLLRAVFDHFGSSPKLLHSMFLWSEKRPGFRPDPRLFDAVVDVLAKSREFDSAWTMILDRIDRSDEEVKEEEEDLVSVGTFAIMIRRYARAGMVQPAIRTFEFARNHKSVKDSGSELSLFEKLLDSLCKEGSVRAAYEYFLRRKKMDPCWVPSIQVYNIMLNGWFRSRKLKHAERLCEEMKKENVRPSVVTYGTLVEGYCRMRRFEKALEMVGDMAKEGIEPNAIVYNPIIDALAEAGRFKEALGMMERFHVLEIGPTQSTYNSLVKGFCKAGDLVGASKILKMMISRGFFPSSTTYNYFFRFFSRCGKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEERLDLAVQVSKEMRHKGFDMDLATSTMLIHLLCKMHRLEAAFAEFEDMTRRGIVPQYLTFQRMTSELKKQGMTEMAQKLCNMMSSVPHPTNLPNTYIEDRDDAHARRKSIIQKAKAFSDMLKDCKEPRELDKYRSSSQSDVSSANHLIEDIEKKISTRQTPFSISVSAGSTN* | 627 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod08g1641 | 626 | Pfam | Pentatricopeptide repeat domain | 463 | 514 | IPR002885 | - | |
| Dod08g1641 | 626 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 93 | 608 | - | - | |
| Dod08g1641 | 626 | MobiDBLite | consensus disorder prediction | 51 | 76 | - | - | |
| Dod08g1641 | 626 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 300 | 334 | IPR002885 | - | |
| Dod08g1641 | 626 | Gene3D | Tetratricopeptide repeat domain | 226 | 359 | IPR011990 | GO:0005515 | |
| Dod08g1641 | 626 | PANTHER | LEAF PROTEIN-LIKE | 93 | 608 | - | - | |
| Dod08g1641 | 626 | Gene3D | Tetratricopeptide repeat domain | 363 | 613 | IPR011990 | GO:0005515 | |
| Dod08g1641 | 626 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 370 | 404 | IPR002885 | - | |
| Dod08g1641 | 626 | TIGRFAM | PPR: pentatricopeptide repeat domain | 443 | 475 | IPR002885 | - | |
| Dod08g1641 | 626 | TIGRFAM | PPR: pentatricopeptide repeat domain | 302 | 336 | IPR002885 | - | |
| Dod08g1641 | 626 | TIGRFAM | PPR: pentatricopeptide repeat domain | 337 | 369 | IPR002885 | - | |
| Dod08g1641 | 626 | TIGRFAM | PPR: pentatricopeptide repeat domain | 268 | 300 | IPR002885 | - | |
| Dod08g1641 | 626 | TIGRFAM | PPR: pentatricopeptide repeat domain | 408 | 440 | IPR002885 | - | |
| Dod08g1641 | 626 | TIGRFAM | PPR: pentatricopeptide repeat domain | 480 | 509 | IPR002885 | - | |
| Dod08g1641 | 626 | TIGRFAM | PPR: pentatricopeptide repeat domain | 373 | 405 | IPR002885 | - | |
| Dod08g1641 | 626 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 335 | 369 | IPR002885 | - | |
| Dod08g1641 | 626 | Gene3D | Tetratricopeptide repeat domain | 117 | 225 | IPR011990 | GO:0005515 | |
| Dod08g1641 | 626 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 475 | 509 | IPR002885 | - | |
| Dod08g1641 | 626 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 265 | 299 | IPR002885 | - | |
| Dod08g1641 | 626 | Pfam | PPR repeat family | 264 | 313 | IPR002885 | - | |
| Dod08g1641 | 626 | Pfam | PPR repeat family | 369 | 414 | IPR002885 | - | |
| Dod08g1641 | 626 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 440 | 474 | IPR002885 | - | |
| Dod08g1641 | 626 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 405 | 439 | IPR002885 | - | |
| Dod08g1641 | 626 | Pfam | PPR repeat | 338 | 361 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod08g1641 | 141 | 562 | Miscellaneous Gene Families | AT4G11690 | 25.641 | 2.03e-42 | 159 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod08g1641 | - | - | gmx:100793484 | 890.567 |