Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1545 ATGGACAAACCTGAAAATGATGATACAGTTTCTGGAACTAGCAGCAGAAACCAATCCGGAATAACTGACGTGAAAAAAGGATTATTTCAGTCTTCGACTGTCAAGGGGAATCATTTTGATGGAAAGAATCAAATGAATGACATTGCTAAGGTTATAAATTCAGGAAGACAGCCTAGCTGCACATTCTGCATCGGGAAAAATAGCTGCAGAATTGTACGCTCACAAACAAAGTTAATGAATATTCTGATACAGAGAGGAAAACCTCAGGAAGCTAGCGTCATTTTCGAAAATCTGATTGAAGAAGGGCACCAACCATCTCTAGTAACATACACATCCCTGTTAAATGCATTGACCATTCAAAAGTGCTTCAAGCCTATACATTCCATTGTCTCAAAGGTGGAAGAAAAACAAATGAAGCCTGACCCGATTTTTTATAATGCCCTTATAAATGCCTTTGCTGAATCTGGGAACATGGAGGATGCCATGAAAGCTGTTCAGAAGATGAAAGAAAGTGGACTAAGGCCAAGTACTAGCACTTATAACACATTGATAAAAGGGCATGGGATTGCAGGTAAGCCTGATGAGTCAATGAAGTTGCTAGACCTGATGTCAAAAGATGAAAATTTGAAACCTAATCTCAACACATACAATATGCTTATAAGAGCATGGTGTAAATGGGAGAACATTTCGGAGGCCTGGAATGTGGTGAACAAGATGACTGCTTCAGGAAAGCAACCAGATGCTGTTACTTTCAACACTATAGCAACAGCTTATGCACATAAAGGACAGACTGCTCAGGCTGAAGGATTGATTTTAGAGATGCAGAAGAATGGTTTGGAACCCAACGAGAGAACTTGCACCATCATCATAAGTGGATACTGTAGAGAAGGTAAAATAAAGGAAGCTCTTAGGTTGGCATACAGGATGAAGGATATGGGACTGCGGCCTAATATTATTGAATTTAACACCCTGATTAATCGCTTTGTGGATGTGATGGATAAAGATGGTGTTGATGAGGTTTTAAAGTTGATGGAAGAATTTAATATTCAACCAGATGTGATAACATATAGTACTATAATGAATGCATGGAGCCAAGTTGGATTCTTAGAGAAATGCAAGGAACTCTTCAATAA 1133 0.3883 MDKPENDDTVSGTSSRNQSGITDVKKGLFQSSTVKGNHFDGKNQMNDIAKVINSGRQPSCTFCIGKNSCRIVRSQTKLMNILIQRGKPQEASVIFENLIEEGHQPSLVTYTSLLNALTIQKCFKPIHSIVSKVEEKQMKPDPIFYNALINAFAESGNMEDAMKAVQKMKESGLRPSTSTYNTLIKGHGIAGKPDESMKLLDLMSKDENLKPNLNTYNMLIRAWCKWENISEAWNVVNKMTASGKQPDAVTFNTIATAYAHKGQTAQAEGLILEMQKNGLEPNERTCTIIISGYCREGKIKEALRLAYRMKDMGLRPNIIEFNTLINRFVDVMDKDGVDEVLKLMEEFNIQPDVITYSTIMNAWSQVGFLEKCKELFN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1545 377 SUPERFAMILY HCP-like 141 242 - -
Dod08g1545 377 Gene3D Tetratricopeptide repeat domain 124 228 IPR011990 GO:0005515
Dod08g1545 377 Gene3D Tetratricopeptide repeat domain 334 377 IPR011990 GO:0005515
Dod08g1545 377 Gene3D Tetratricopeptide repeat domain 229 333 IPR011990 GO:0005515
Dod08g1545 377 Gene3D Tetratricopeptide repeat domain 66 123 IPR011990 GO:0005515
Dod08g1545 377 TIGRFAM PPR: pentatricopeptide repeat domain 285 318 IPR002885 -
Dod08g1545 377 TIGRFAM PPR: pentatricopeptide repeat domain 215 248 IPR002885 -
Dod08g1545 377 TIGRFAM PPR: pentatricopeptide repeat domain 145 176 IPR002885 -
Dod08g1545 377 TIGRFAM PPR: pentatricopeptide repeat domain 249 283 IPR002885 -
Dod08g1545 377 TIGRFAM PPR: pentatricopeptide repeat domain 179 212 IPR002885 -
Dod08g1545 377 Pfam PPR repeat family 246 295 IPR002885 -
Dod08g1545 377 Pfam PPR repeat family 140 186 IPR002885 -
Dod08g1545 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Dod08g1545 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 211 IPR002885 -
Dod08g1545 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Dod08g1545 377 Pfam PPR repeat 208 240 IPR002885 -
Dod08g1545 377 PANTHER OS01G0228400 PROTEIN 1 377 - -
Dod08g1545 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Dod08g1545 377 Pfam Pentatricopeptide repeat domain 76 117 IPR002885 -
Dod08g1545 377 Pfam Pentatricopeptide repeat domain 321 363 IPR002885 -
Dod08g1545 377 MobiDBLite consensus disorder prediction 1 22 - -
Dod08g1545 377 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 377 - -
Dod08g1545 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1545 Dod-Chr8 35037512 35041015 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1545 145 376 Miscellaneous Gene Families AT4G11690 28.511 2.98e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1545 K17710 - gmx:100779093 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1545 08 35037512 35041015 Dod08g1545 08 35037512 35041015 ECH